Query= MSMg01no490_n08.b1 MSMg01no490_n08.b1 CHROMAT_FILE:
MSMg01no490_n08.b1 PHD_FILE: MSMg01no490_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:32 2005
(594 letters)
>mm_chr12_56483902_56484895
Length = 994
Score = 996 bits (515), Expect = 0.0
Identities = 530/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 60 tgaccactagaatagtttgttaccagggagccctcggggatactcagctggatagactga 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tgaccactagaatagtttgttaccagggagccctcggg-atactcagctggatagactga 319
Query: 120 ggctttgggctttttccttaaggcagcgtctcactttacagccctggctggccagaaact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggctttgggctttttccttaaggcagcgtctcactttacagccctggctggccagaaact 379
Query: 180 cactatgtagagcacgctgacccccagctcttttcctacctctgcatcccaagccctgag 239
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct: 380 cactatgtagagcacgctggcctccaactcttttcctacctctgcatcccaagccctgag 439
Query: 240 gtaagggtgtgcgataccacgcctgtataaagggtttaaggtggttttgttggtgatggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtaagggtgtgcgataccacgcctgtataaagggtttaaggtggttttgttggtgatggt 499
Query: 300 gatagttttatgcttgttgagaaggataccaaggggtgtctcgcagtgcgtacctctctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatagttttatgcttgttgagaaggataccaaggggtgtctcgcagtgcgtacctctctg 559
Query: 360 gtgaggagcttgcagcccttcatttgcctgaactgggtcccaagtgctgggttgtaggca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgaggagcttgcagcccttcatttgcctgaactgggtcccaagtgctgggttgtaggca 619
Query: 420 tgagtcgccatgcccacttagatggaattattaaaattgccatgaaaggggctggggaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgagtcgccatgcccacttagatggaattattaaaattgccatgaaaggggctggggaga 679
Query: 480 tggctcagttggcaaagtgctctccaaggaccggaggacctgaagttgatcccagtcctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggctcagttggcaaagtgctctccaaggaccggaggacctgaagttgatcccagtcctc 739
Query: 540 ccatgcagagactaagcttaggggcatatgcttagacagcactggggaagctaag 594
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccatacagagactaagcttaggggcatatgcttagacagcactggggaagctaag 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_n08.g1 MSMg01no490_n08.g1 CHROMAT_FILE:
MSMg01no490_n08.g1 PHD_FILE: MSMg01no490_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:32 2005
(261 letters)
>mm_chr12_56662684_56663343
Length = 660
Score = 451 bits (233), Expect = e-131
Identities = 254/261 (97%), Gaps = 1/261 (0%)
Strand = Plus / Minus
Query: 1 ccagaaagcgctgtacacatttaggattcttcctgcttcaaatgatcctcacaggagtgc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccagaaagtgctgtacacatttaggattcttcctgcttcaaatgatcctcacaggagtgc 512
Query: 61 ccaaagtttctgaaatcgcagtcaagcccacgatcaaggtcagccgccatactaagatag 120
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct: 511 ccaaagtttctgaaatcgcagtcaagttgatgatcaagatcagccgccatactaagatag 452
Query: 121 tcatgtttttagaagacacattcttcttgctttaatagcattcaggtgcttcctaaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcatgtttttagaagacacattcttcttgctttaatagcattcaggtgcttcctaaacta 392
Query: 181 tctacttcgacaatacagttcagagctaaatattcccactaatgacttgacattagagac 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 391 tctacttcgacaatacagttcagagctaaatattcccactaatgacttg-cattagagac 333
Query: 241 ttgattcatttatcgctttat 261
|||||||||||||||||||||
Sbjct: 332 ttgattcatttatcgctttat 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 660
Length adjustment: 9
Effective length of query: 252
Effective length of database: 651
Effective search space: 164052
Effective search space used: 164052
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
