BAC Information

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BAC

Clone NameMSMg01-491F18
Chromosome12 (Build37)
Map Location 51,523,433 - 51,523,755
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491F18.T7 (MSMg01no491_f18.b1)MSMg01-491F18.TJ (MSMg01no491_f18.g1)
ACCAG569372AG569373
length753776
length of high quality
(start - end)		710 (35 - 744)516 (64 - 579)
definitionCHROMAT_FILE: MSMg01no491_f18.b1 PHD_FILE: MSMg01no491_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:15 2005CHROMAT_FILE: MSMg01no491_f18.g1 PHD_FILE: MSMg01no491_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCATA
TTATTTCAAAAGAAGTCCATGTGTATATATACAAAACCTTGTCAAGATGT
ATACCTAAAACTTTATACCCTTATTAAGTTCTTATAAACTACTAGGGTGG
GTGGATATGGGGGACTTTTGGTATAGCATTTCGTAAATGAGCTAAATACC
TAATAAAAAATGGAAAAAAAAAGTTAAAAAAAATAAAATAAAATTATCTA
AATAGAGGATGTGCCTAGTCCTGCTGAGACTGGATATCCCAGGGTTGGAT
GGTTCTTAAGGGGGTGTTCCCTTCCATGAGGAGAAGGGGGAGGGGACCAG
GGTGGGACTGGGAAGAGAGAAGGCAGGGGGCTGTGATCAGGACGCAAAGT
AAATGTAAAAAGTTATCTCAGTCAGTGTTTCTCAATCTTCCTAATGCCGT
GACCCTTTAGTGCAGCTCCTCAGGCTGTTGTGACACCCCCAAAATACTTT
TGCTGCTACTCCATAACTAAAATTCTTCTACTGTTATGAACAGTAATGTA
TATGTCAGATATGCAGAATATTGGATATGTGACCCCCAAAGGGCTCATGA
CCCATAGGTAGAGAACCACTGATCTACAAGTGTGTTATAGCTGTCCAAAT
AGAAAGTCATTGGAAATGTTTATCATAGATCATGTAAGGAAAGAATGACA
TGTTATTGGATCCCAGTTATTACTCATTAAATCATGAGAGTCCATGAATT
TAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGGAAAGGTTGTTATGTATTAAATGTCTGGAATATTG
CTGCATCCTGAGAAGATACACACGCTGCATGGAAGAAACGCTTTTAAATG
AAATCTTTGCAGTTCTATCATCACATCCAAAGGCTATCATGGTGCTCCTG
CTATTGATAAGACAGCAAGGAGGTTAGGGTGCTTGAGAAATGTTAGAATT
GGACATTGATAAAAAGGGTATTCAGGAGCTTGCTGCTATTGAGCCTGAAG
AGCTTTCCAGTCCAAGGCTGATTAAACTGGAGGAAGAAAGAAGTAAACAA
GTCAAGTAAGAAGTTATAACATAGGCAGCAAGAAAGTTCATAGCAAAGAA
CCTGCTGATGGTGTTTGCCACTGTCTGTAGCAGAGTAGCAATGGTGTCAT
CTATGAAAGACTTGCAAGAGCAGGGAGGCAGATAGACATAGAACAGTGTA
TTGTGTGCTCCTTTGTCCTCTGGTCATAACAAGATACCATCTTGGACTTT
GCCCTGGTATCCATGGCAACAAGTGCAGAATAGTACAGTGATAGTCAGGT
CTGTGATAATGGTAATGGAGCTAGGGTCCCTCCCTAGGCAGGGTCAAGAG
ACTTTTACCTGGTATTCCAGCTATTACTTTCTCCCTCCACTGCAAGAGGT
CTATCTTGGGACATGCGANGCTGTATACAAAGTTGACGGCTGGTTGAAAC
TAGATTCCAGATGTAGCTTCATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_f18.b1 MSMg01no491_f18.b1 CHROMAT_FILE:
MSMg01no491_f18.b1 PHD_FILE: MSMg01no491_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:15 2005
         (710 letters)



>mm_chr12_51522646_51523755
          Length = 1110

 Score =  609 bits (315), Expect = e-178
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                        
Query: 388  tcagtgtttctcaatcttcctaatgccgtgaccctttagtgcagctcctcaggctgttgt 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 tcagtgtttctcaatcttcctaatgccgtgaccctttagtgcagctcctcaggctgttgt 1051

                                                                        
Query: 448  gacacccccaaaatacttttgctgctactccataactaaaattcttctactgttatgaac 507
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1050 gacacccccaaaatacttttgctgctactccagaactaaaattcttctactgttatgaac 991

                                                                        
Query: 508  agtaatgtatatgtcagatatgcagaatattggatatgtgacccccaaagggctcatgac 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  agtaatgtatatgtcagatatgcagaatattggatatgtgacccccaaagggctcatgac 931

                                                                        
Query: 568  ccataggtagagaaccactgatctacaagtgtgttatagctgtccaaatagaaagtcatt 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  ccataggtagagaaccactgatctacaagtgtgttatagctgtccaaatagaaagtcatt 871

                                                                        
Query: 628  ggaaatgtttatcatagatcatgtaaggaaagaatgacatgttattggatcccagttatt 687
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 870  ggaaatgtttatcatagatcatgtaaggaaagaatggcatgttattggatcccagttatt 811

                                   
Query: 688  actcattaaatcatgagagtcca 710
            |||||||||||||||||||||||
Sbjct: 810  actcattaaatcatgagagtcca 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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