BAC Information

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BAC

Clone NameMSMg01-492F08
Chromosome12 (Build37)
Map Location 30,253,543 - 30,305,430
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneAllc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492F08.T7 (MSMg01no492_f08.b1)MSMg01-492F08.TJ (MSMg01no492_f08.g1)
ACCAG570115AG570116
length719779
length of high quality
(start - end)		574 (68 - 641)103 (82 - 184)
definitionCHROMAT_FILE: MSMg01no492_f08.b1 PHD_FILE: MSMg01no492_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:32 2005CHROMAT_FILE: MSMg01no492_f08.g1 PHD_FILE: MSMg01no492_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,304,857 - 30,305,430)(30,253,543 - 30,253,645)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCAGAAGACTGTCGCTATTTTATATTAAAAATATTTATATAAGTTTG
CTTAAAAAATAGTTCTTCCAAAATAAAAGCAAAGGAGAGGTGTCTCCCAA
AACAAGAATGATGAAGAACTGGCACCAACAGATCTGATCTAGCGAAATCA
TCAAAGATTTTCTATTAAAAAGGAAAATTATAGGTGTAATTCAGAGAAGC
GTGAAGAAATAGAGTATTGCCCCAATTGAACAAGAAGGTGATCATCTGAC
AAATAATATGAGCATCTCACGAGCTTTAATGCATGTGAGGAAGATAACCA
GGTGTAATAAATGAGCGTCTGTGCTCCTGGATGCATCCCATCCCTCAGAG
TCACACACAGACGGGAGAAGCTGCAGGCAACGTCTTGGAAAGCTGCTGCT
CCTGGGAAGCAGCTGAGCCACTTTTAATGTCAAGTGTTAATCGGTCTAGA
GTGTAGGCTATTATCTTAGCATGACAGATAAACAGGGTCAAAGAATGTGT
AGCCAGCTTGAAACAGACAATCTAACAATCAAACTTAAGATAAAAGTCAT
AGAAGAGAGGAGTGATGGGGAACAACGATTATCAACCAGCTAAATGCCGA
CATTCAAGACCCACAGCTGAGGGCTGATGGAGGCTTCCCCTTGTAAACCT
GATGATGTGAGTTCGATTN

CATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGTANAAGCTAAAGACAAACACAA
ATAGTGAATGCCGTGTGCCTAGCTAAGCTCTGGGACGCTGGAAAGGCATG
GTGATCTTGATGGACAGACCAGGTTGGATTTCTTGNAAGGGTTGAGTTAA
ACTTGCTTTGTCTCTCGAAATGGGANAAAGAACAGTCAGGANAAAAAAGG
AGATAAGGCTGCATATAACTCTAACCTTACTCTTGGTTCTAAAAGGGAAG
GCCCCCCTATTTAATGGAATTTGGCGTTTTTACCCACGGCGAAAAAAAAA
AAAGGCCTTTCCGTAGGTNNNNNNNNNNNNNNTNNNNNNTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNTCNNNNNNTTN
NTNNNTNNTTTNNNNNNNTNNNNNTNTNTNNNNNNNTTATTGGGGGGGGG
GGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGGGGTGGGGGT
GGGGGCGGGGGGGGGGGGGGGGGCANNNNNTTTNTNTNTNTNTTTTNTTN
NTTTTTTTTTTTTTTTNTTTTTTTTNNNNTTTTTTTATTTTATTATTAAA
AAATTCCNNTNNNNNNTNNTTNTTNNTNTATNTTTTTTTAATTNATTTTT
TTTTTTTNTTTATTTTTTATTTTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_f08.b1 MSMg01no492_f08.b1 CHROMAT_FILE:
MSMg01no492_f08.b1 PHD_FILE: MSMg01no492_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:32 2005
         (574 letters)



>mm_chr12_30304629_30305602
          Length = 974

 Score = 1102 bits (570), Expect = 0.0
 Identities = 573/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattttatattaaaaatatttatataagtttgcttaaaaaatagttcttccaaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctattttatattaaaaatatttatataagtttgcttaaaaaatagttcttccaaaataaa 743

                                                                       
Query: 61  agcaaaggagaggtgtctcccaaaacaagaatgatgaagaactggcaccaacagatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agcaaaggagaggtgtctcccaaaacaagaatgatgaagaactggcaccaacagatctga 683

                                                                       
Query: 121 tctagcgaaatcatcaaagattttctattaaaaaggaaaattataggtgtaattcagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctagcgaaatcatcaaagattttctattaaaaaggaaaattataggtgtaattcagaga 623

                                                                       
Query: 181 agcgtgaagaaatagagtattgccccaattgaacaagaaggtgatcatctgacaaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agcgtgaagaaatagagtattgccccaattgaacaagaaggtgatcatctgacaaataat 563

                                                                       
Query: 241 atgagcatctcacgagctttaatgcatgtgaggaagataaccaggtgtaataaatgagcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgagcatctcacgagctttaatgcatgtgaggaagataaccaggtgtaataaatgagcg 503

                                                                       
Query: 301 tctgtgctcctggatgcatcccatccctcagagtcacacacagacgggagaagctgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctgtgctcctggatgcatcccatccctcagagtcacacacagacgggagaagctgcagg 443

                                                                       
Query: 361 caacgtcttggaaagctgctgctcctgggaagcagctgagccacttttaatgtcaagtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caacgtcttggaaagctgctgctcctgggaagcagctgagccacttttaatgtcaagtgt 383

                                                                       
Query: 421 taatcggtctagagtgtaggctattatcttagcatgacagataaacagggtcaaagaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taatcggtctagagtgtaggctattatcttagcatgacagataaacagggtcaaagaatg 323

                                                                       
Query: 481 tgtagccagcttgaaacagacaatctaacaatcaaacttaagataaaagtcatagaagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtagccagcttgaaacagacaatctaacaatcaaacttaagataaaagtcatagaagag 263

                                             
Query: 541 aggagtgatggggaacaacgattatcaaccagct 574
           |||||||||||| |||||||||||||||||||||
Sbjct: 262 aggagtgatgggcaacaacgattatcaaccagct 229


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no492_f08.g1 MSMg01no492_f08.g1 CHROMAT_FILE:
MSMg01no492_f08.g1 PHD_FILE: MSMg01no492_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:32 2005
         (103 letters)



>mm_chr12_30253343_30253845
          Length = 503

 Score =  192 bits (99), Expect = 7e-54
 Identities = 102/103 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctaaagacaaacacaaatagtgaatgccgtgtgcctagctaagctctgggacgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctaaagacaaacacaaatagtgaatgccgtgtgcctagctaagctctgggacgctgg 260

                                                      
Query: 61  aaaggcatggtgatcttgatggacagaccaggttggatttctt 103
           | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggcatggtgatcttgatggacagaccaggttggatttctt 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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