Query= MSMg01no492_h16.b1 MSMg01no492_h16.b1 CHROMAT_FILE:
MSMg01no492_h16.b1 PHD_FILE: MSMg01no492_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:43 2005
(266 letters)
>mm_chr12_67791606_67792271
Length = 666
Score = 455 bits (235), Expect = e-132
Identities = 259/267 (97%), Gaps = 2/267 (0%)
Strand = Plus / Minus
Query: 1 tttctaaaatattagtcccaag-aaagtcgaggtttatgctctttatacgaggatttcat 59
||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 435 tttctaaaatactagt-ccaagaaaattcgaggtttatgctctttatacgaggatttcat 377
Query: 60 ttgcatcttgatggtggtatattaataagtaagttcaatacatattttataagatttaat 119
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 376 ttgcatcttgatggtggtatattaatcagtaaggtcaatacatattttataagatttaat 317
Query: 120 tggtagcatcttctagtcattagtttaatatttaataattacttgatacactttgttttc 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 316 tggtagcatcttctagtcattagtttaatatttaataattccttgatacactttgttttc 257
Query: 180 tccccaactgtggtgactttcacatatcaccttttatatgtgtgtttcccaaaatctttt 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 256 tccccaactgtggtgactttcacatatcacctttaatatgtgtgtttcccaaaatctttt 197
Query: 240 taataataaatctttataatttaatgc 266
|||||||||||||||||||||||||||
Sbjct: 196 taataataaatctttataatttaatgc 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no492_h16.g1 MSMg01no492_h16.g1 CHROMAT_FILE:
MSMg01no492_h16.g1 PHD_FILE: MSMg01no492_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:43 2005
(543 letters)
>mm_chr12_67712377_67713319
Length = 943
Score = 961 bits (497), Expect = 0.0
Identities = 524/543 (96%), Gaps = 17/543 (3%)
Strand = Plus / Plus
Query: 1 tgtgaaggggggatgggaggaggttgaactttcgggatgtaaattaaaaaaaaaggtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaaggggggatgggaggaggttgaactttcgggatgtaaattaaaaaaaaaggtaat 260
Query: 61 gccaatttgttgccagtgactatcaccaagttgactattcttcataaaattcaatgcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaatttgttgccagtgactatcaccaagttgactattcttcataaaattcaatgcact 320
Query: 121 attcatttactggttatataaaattctacagtgacttaatacaaatggttctgtatatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 attcatttactggttatataaaattctacagtgacttaatacaaatggttctgtagatta 380
Query: 181 tgtttccctataagtatatatatatatatatatatatacatatatatatatatatatata 240
|||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tgtttccccataagtatatatatatatatatatatata----------------tatata 424
Query: 241 tatatatattcttctgaaataaacactgaaacagtaacaaggtatggaagtgttcatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tatatatattcttctgaaataaacactgaaacagtaacaaggtatggaagtgttcatgtg 484
Query: 301 aagtaattatagtaattgtgtaaattaatattttattgtttttcttaggaaaattttaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagtaattatagtaattgtgtaaattaatattttattgtttttcttaggaaaattttaga 544
Query: 361 aaaaaataaacataaaccttattgatttccattggacttctccttatatgtgccttattt 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaaaa-taaacataaaccttattgatttccattggacttctccttatatgtgccttattt 603
Query: 421 gacttttctctttcctctgggcattatggaatccagatatcttaactggtctctctggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gacttttctctttcctctgggcattatggaatccagatatcttaactggtctctctggca 663
Query: 481 ctctgctcccaatcgttaaaatctaatcaatatccacttttctctaagcaagtatggttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctctgctcccaatcgttaaaatctaatcaatatccacttttctctaagcaagtatggttt 723
Query: 541 aag 543
|||
Sbjct: 724 aag 726
Score = 68.4 bits (35), Expect = 1e-15
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 210 atatatatacatatatatatatatatatatatatatata 248
||||||||| |||||||||||||||||||||||||||||
Sbjct: 433 atatatatatatatatatatatatatatatatatatata 395
Score = 66.5 bits (34), Expect = 5e-15
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 212 atatatacatatatatatatatatatatatatatatat 249
||||||| ||||||||||||||||||||||||||||||
Sbjct: 433 atatatatatatatatatatatatatatatatatatat 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 5
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
