BAC Information

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BAC

Clone NameMSMg01-494C18
Chromosome12 (Build37)
Map Location 85,661,508 - 85,795,016
singlet/doubletdoublet
Overlap geneZfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494C18.T7 (MSMg01no494_c18.b1)MSMg01-494C18.TJ (MSMg01no494_c18.g1)
ACCAG571515AG571516
length750746
length of high quality
(start - end)		700 (51 - 750)527 (59 - 585)
definitionCHROMAT_FILE: MSMg01no494_c18.b1 PHD_FILE: MSMg01no494_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:57 2005CHROMAT_FILE: MSMg01no494_c18.g1 PHD_FILE: MSMg01no494_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,661,508 - 85,662,207)(85,794,497 - 85,795,016)
sequence
CGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCCATGCTTTCC
CCTGGGGTGGTGGGGAGTTACGCAGGAGTTTTGGTTTAGGGAACCAGCAA
GGTCTATGCTCAGCATGGATAGACAGACCCTTAGGTTCAGAATCCAGTGG
GGACCAAGAAAGGAAGAATGGTGGGAAGGAGGAAGAATGCAGATGAATCC
ATTGCGTGTGTAATCAAACAGTCCCACACTCGCCCCTGGCCCCCATTTGT
TGGCTAGTTAGTGCTCAGTACTGACGACTACACCTGAACATTGTGCTGCG
CTATGCATGTGCTTTACCTCAGGTTACACAGTGAGACTGGATTTCTATTC
GTTTTTGTTGTTCTGAGATCATTGTAGCCCAGACAGACCTTGACTTTGCT
GTAGAGCCCAGGCTCCCTGGGTGCTGAGATTGTAGGCGTGCACTCCCCAG
CTCCTGCTGGGCTTATTTTTAAAATAAGCCTAATACCTTTTAGAATGAAG
GAAAAGTAAGTCACACTGTCCTGTTACACAATAAAACTACTGTCATACCT
GGGAATTGCTTTTTACTTTTTCTTAGGATGTTATAATTAGTGGTAAAATG
GGAAATAGATTTATAATCACTTTTGTTGTATGGTCTTCATAATATTGTAT
ATGTGTGTGTATTTAAAAGTCCTAAAAGATGTTGCTTCCAGTTCTTTGTC
TTATATTTTCAATGAACATCTTTGGGAATATAGCTTTCCCATATTTTAAG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCGCTTTTGTTTGGTCTGCTCCAGGAGTCACTGTGTTACTT
TCTGATACACATAAGCACATCTCTTTGTCTTAGTAGAATTAAGTCTCCTC
TCAGATACCAGCACCTTCAATTTGAAGAAGAGCTGGATGCTCTCTGCTTC
TAGAACCTCACTTATCCAGCAAAAACTGGCCTTGTACCAGTCTTCCAGAT
ACTGGCTTTTAGAAGTCCTGCTCCCAGGAGACCTCCACAGACACCAAGAT
GAACCCCAATTTTTTTAAAAGACAACAAAAATCTTACCAACACTTTTTTT
TTTGCTAGTAAGAAAAGGATGTTTTAGCAAAAACAGAACAAAACAAAAAA
CAAAAAACAAAAAACAAACAAACAAACAAACAAACACCCAGGCTAGAGAA
TCTCTTTTGTTGTGAACACTATTTCTTTAGTAAGAGGCCAGGTATAGTGG
TACAGACTTTTACTGGAGGCACAGGTAGGAAAGCAAGAGGATGGTGAGTC
TGAAGCCAATCTGGGCTACACAGTGAGACCCTATCTCATAAAAAGGAAAG
AATTAGAAAGGAGGAAACTCCGGTATCCTTACTTTTGAATATAATCTAAT
CATCCTCTTTAGTACTAAAGACTGAACTTAGGGTCTTGTTCATGACAAAC
TACTCCCTAGCGCTGAACTACAGTCTCACTTCTTATTGTTCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_c18.b1 MSMg01no494_c18.b1 CHROMAT_FILE:
MSMg01no494_c18.b1 PHD_FILE: MSMg01no494_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:57 2005
         (700 letters)



>mm_chr12_85661308_85662407
          Length = 1100

 Score = 1201 bits (621), Expect = 0.0
 Identities = 680/705 (96%), Gaps = 14/705 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggggtggtggggagttacgcaggagttttggtttagggaaccagcaaggtctatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggggtggtggggagttacgcaggagttttggtttagggaaccagcaaggtctatgct 260

                                                                       
Query: 61  cagcatggatagacagacccttaggttcagaatccagtggggaccaagaaaggaag-aat 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 261 cagcatggatagacagacccttaggttcagaatccagtggggaccaagaaag-aaggaat 319

                                                                       
Query: 120 ggtgggaaggaggaagaatgcagatgaatccattgcgtgtgtaatcaaacagtcccacac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtgggaaggaggaagaatgcagatgaatccattgcgtgtgtaatcaaacagtcccacac 379

                                                                       
Query: 180 tcgcccctggcccccatttgttggctagttagtgctcagtactgacgactacacctgaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcgcccctggcccccatttgttggctagttagtgctcagtactgacgactacacctgaac 439

                                                                       
Query: 240 attgtgctgcgctatgcatgtgctttacctcaggttacacagtgagactggatttctatt 299
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attgtgctgcgctatgcatgcgctttacctcaggttacacagtgagactggatttctatt 499

                                                                       
Query: 300 cgtttttgttgttctgagatcattgtagcccagacagaccttgactttgctgtagagccc 359
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgtttttgttgttctgagatcactgtagcccagacagaccttgactttgctgtagagccc 559

                                                                       
Query: 360 aggctccctgggtgctgagattgtaggcgtgcactccccagctcctgctgggcttatttt 419
            |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 gggctccctggg--ctgagattgtaggcgtgcactacccagctcctgctgggcttatttt 617

                                                                       
Query: 420 taaaataagcctaataccttttagaatgaaggaaaagtaagtcacactgtcctgttacac 479
            ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 618 -aaaataagcataataccttttagaatcaaggaaa-gtaagtcacactgtcctgttacac 675

                                                                       
Query: 480 aataaaactactgtcatacctgggaattgctttttactttttcttaggatgttataatta 539
           | ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 676 agtaaaactgctgtcatatctgggaatttctttttactttttcttaggatgttataatta 735

                                                                       
Query: 540 gtggtaaaatgggaaatagatttataatcacttttgttgtatggtcttcataatattgta 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gtggtaaaatgggaaatagatttataatcacttttgttgtatggtcttcataatattgta 795

                                                                       
Query: 600 tatgtgtgtgtatttaaaagtcctaaaagat--------gttgcttccagttctttgtct 651
           |||||||||||||||||||||||||||||||        |||||||||||||| ||||||
Sbjct: 796 tatgtgtgtgtatttaaaagtcctaaaagataatcgtatgttgcttccagttcgttgtct 855

                                                        
Query: 652 tatattttcaatgaacatctttgggaatatagctttcccatattt 696
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tatattttcaatgaacatctttgggaatatagctttcccatattt 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_c18.g1 MSMg01no494_c18.g1 CHROMAT_FILE:
MSMg01no494_c18.g1 PHD_FILE: MSMg01no494_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:57 2005
         (527 letters)



>mm_chr12_85794465_85795397
          Length = 933

 Score =  874 bits (452), Expect = 0.0
 Identities = 505/530 (95%), Gaps = 16/530 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcttttgtttggtctgctccaggagtcactgtgttactttctgatacacataagcacatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcttttgtttggtctgctccaggagtcactgtgttactttctgatacacataagcacatc 493

                                                                       
Query: 64  tctttgtcttagtagaattaagtctcctctcagataccagcaccttcaatttgaagaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tctttgtcttagtagaattaagtctcctctcagataccagcaccttcaatttgaagaaga 433

                                                                       
Query: 124 gctggatgctctctgcttctagaacctcacttatccagcaaaaactggccttgtac--ca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 432 gctggatgctctctgcttctagaacctcacttatccagcaaaaactggccttgtaccaca 373

                                                                       
Query: 182 gtcttccagatactggcttttagaagtcctgctcccaggagacctccacagacaccaaga 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcttccagatactggcttttagaaatcctgctcccaggagacctccacagacaccaaga 313

                                                                       
Query: 242 tgaaccccaatttttttaaaagacaacaaaaatcttaccaacac----ttttttttttgc 297
           |||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||
Sbjct: 312 tgaaccccaattttttaaaaagacaacaaaaatcttaccaacacttttttttttttttgc 253

                                                                       
Query: 298 tagtaagaaaaggatgttttagcaaaaacagaacaaaacaaaaaacaaaaaacaaaaaac 357
           ||||||||||||||||||||||||||     ||||||||  | ||||||||||   ||||
Sbjct: 252 tagtaagaaaaggatgttttagcaaa-----aacaaaac--agaacaaaaaac---aaac 203

                                                                       
Query: 358 aaacaaacaaacaaacaaacacccaggctagagaatctcttttgttgtgaacactatttc 417
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 202 aaacaaacaaacaaaaaaacacccaggctagagaatctcttttgttgtgaacacaacttc 143

                                                                       
Query: 418 tttagtaagaggccaggtatagtggtacagacttttactggaggcacaggtaggaaagca 477
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tttggtaagaggccaggcatagtggtacagacttttactggaggcacaggtaggaaagca 83

                                                             
Query: 478 agaggatggtgagtctgaagccaatctgggctacacagtgagaccctatc 527
           |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 82  agaggatggtgagtctgaagccaacctgggctacacagtgagaccctatc 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 933
Length adjustment: 10
Effective length of query: 517
Effective length of database: 923
Effective search space:   477191
Effective search space used:   477191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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