BAC Information

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BAC

Clone NameMSMg01-494I21
Chromosome12 (Build37)
Map Location 26,640,656 - 26,671,642
singlet/doubletdoublet
Overlap genenone
Upstream geneMboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494I21.T7 (MSMg01no494_i21.b1)MSMg01-494I21.TJ (MSMg01no494_i21.g1)
ACCAG571807AG571808
length748749
length of high quality
(start - end)
695 (30 - 724)657 (61 - 717)
definitionCHROMAT_FILE: MSMg01no494_i21.b1 PHD_FILE: MSMg01no494_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:25 2005CHROMAT_FILE: MSMg01no494_i21.g1 PHD_FILE: MSMg01no494_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,640,656 - 26,641,345)(26,671,005 - 26,671,642)
sequence
CGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCAAGCTATTT
TCACACAGTGTTTGGGATCCTTGATGATCCAGCTCATCAATCTCTGTTAG
AAATCCAGATATGGGCCATCAGCATATCCTGCCTGCTCTGTGTCATGGAT
CTCATCCCTACATCCCAAGCCCTCCTTGGCACCTCTTTACCATGGTGCTA
GGGTTTAAGCATTCATTAGGGACACAGTGTACCTAGGCCATCACTGGCAA
TTGACACAGTTGACAAAGAAATAGAATATTTAGAACATCCCGGGGCAGCC
CCAGACGACCCCTTCAGCAACAGATCCCAGATCTCAGAATTATCTCTTCT
TGGTGAAACTGTAGTTCTGAGTACCCTATGTATTCTGGACACCACAAAGG
GAGGGAGAACCTTGTTCTTCTGCTTCATAAGCATAGGGAATCTAATCAGA
CAGGACACAGAGCACCTACACATAGAGAGGGGCTCAAAGATCAGACCAGT
TTTGACCAGGCCATTCACTAGGTCCAGCATGGCCTCCTGTGGTGGATTTC
TTGCTGTGTTACTGGCTCATGTGACAAAAGAGCATTCCCGATCTATCGTC
ATGGCCACCACCATTGTCATGGTCTTCTGTTCGTGTGCCAGGCAAGGTAT
GTAATTTCTATTCATTTTTTACAAAAGGTATTTGTCTTCCCAGTATGTGT
GCAGATTGCTACGATGCACACTCAGTAGTCAGAGGACCACTTGCAGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCATTAGCAAGCCTTGTGTAGCTTGAACTCCAGAGCCTCTGT
TTCTCTCATCTGTGCAACTATCCTGATGGATAACACAATTTCTATACGCT
CCTGCTGAGAAGGAGAGCAATTAAGTATAAAAGACATCCAGGCACTCTGT
AGTATGGACCTATAACCCCAGCACAGGCAGGCTGAGGCAGGATGATCTGG
ATGCCAGAGCAGTCTGGGGTATACAGTAATTACTATCTTGAGAACTAACA
ATGCTTCTCTAAAACTGTGTGTGCACTCATGTTAATAAATAATATGTGTG
ATGCATATAGAAACGTGATTTATGTGTTTATATAACGGTAGAAATAAAAG
AACAACTGCCCACAGCATGCAATCTTGTTTTTTACAACTAATACTCATTT
TAACCACATTATCATTAGAAATATGAGTGCGTGTTCCTTTATATTTTTTA
TGTGTAATCATCATACTGTTAGTGCTCACCTTAGGCTGTGTAGAGAAGAA
GTAGGAGAATGACGAGATGGAGATGAAGATCTCAGCAAAAGGTTTAAACT
CCAGCCCACACCTGAGTTCCTTAAGTGAGATCCTGGTATCCAGGGAAATG
GAAGAGTCTCGGTTCCCCCACTGTGTGATATGTGGATGGTAATGCTGACC
TTATCAGACTTCTGAGAAATAAGACTCAAAAACCAGATAACATGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_i21.b1 MSMg01no494_i21.b1 CHROMAT_FILE:
MSMg01no494_i21.b1 PHD_FILE: MSMg01no494_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:25 2005
         (695 letters)



>mm_chr12_26640451_26641545
          Length = 1095

 Score = 1326 bits (686), Expect = 0.0
 Identities = 689/690 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccaagctattttcacacagtgtttgggatccttgatgatccagctcatcaatctc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaagctattttcacacagtgtttgggatccttgatgatccagctcatcaatctc 265

                                                                       
Query: 66  tgttagaaatccagatatgggccatcagcatatcctgcctgctctgtgtcatggatctca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgttagaaatccagatatgggccatcagcatatcctgcctgctctgtgtcatggatctca 325

                                                                       
Query: 126 tccctacatcccaagccctccttggcacctctttaccatggtgctagggtttaagcattc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccctacatcccaagccctccttggcacctctttaccatggtgctagggtttaagcattc 385

                                                                       
Query: 186 attagggacacagtgtacctaggccatcactggcaattgacacagttgacaaagaaatag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attagggacacagtgtacctaggccatcactggcaattgacacagttgacaaagaaatag 445

                                                                       
Query: 246 aatatttagaacatcccggggcagccccagacgaccccttcagcaacagatcccagatct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatatttagaacatcccggggcagccccagacgaccccttcagcaacagatcccagatct 505

                                                                       
Query: 306 cagaattatctcttcttggtgaaactgtagttctgagtaccctatgtattctggacacca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagaattatctcttcttggtgaaactgtagttctgagtaccctatgtattctggacacca 565

                                                                       
Query: 366 caaagggagggagaaccttgttcttctgcttcataagcatagggaatctaatcagacagg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caaagggagggagaaccttgttcttctgcttcataagcatagggaatctaatcagacagg 625

                                                                       
Query: 426 acacagagcacctacacatagagaggggctcaaagatcagaccagttttgaccaggccat 485
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 626 acacagagcacctacacatagagaggggctcaaagatcagacaagttttgaccaggccat 685

                                                                       
Query: 486 tcactaggtccagcatggcctcctgtggtggatttcttgctgtgttactggctcatgtga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcactaggtccagcatggcctcctgtggtggatttcttgctgtgttactggctcatgtga 745

                                                                       
Query: 546 caaaagagcattcccgatctatcgtcatggccaccaccattgtcatggtcttctgttcgt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 caaaagagcattcccgatctatcgtcatggccaccaccattgtcatggtcttctgttcgt 805

                                                                       
Query: 606 gtgccaggcaaggtatgtaatttctattcattttttacaaaaggtatttgtcttcccagt 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtgccaggcaaggtatgtaatttctattcattttttacaaaaggtatttgtcttcccagt 865

                                         
Query: 666 atgtgtgcagattgctacgatgcacactca 695
           ||||||||||||||||||||||||||||||
Sbjct: 866 atgtgtgcagattgctacgatgcacactca 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no494_i21.g1 MSMg01no494_i21.g1 CHROMAT_FILE:
MSMg01no494_i21.g1 PHD_FILE: MSMg01no494_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:25 2005
         (657 letters)



>mm_chr12_26670586_26671642
          Length = 1057

 Score = 1234 bits (638), Expect = 0.0
 Identities = 638/638 (100%)
 Strand = Plus / Minus

                                                                        
Query: 20   cttgaactccagagcctctgtttctctcatctgtgcaactatcctgatggataacacaat 79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 cttgaactccagagcctctgtttctctcatctgtgcaactatcctgatggataacacaat 998

                                                                        
Query: 80   ttctatacgctcctgctgagaaggagagcaattaagtataaaagacatccaggcactctg 139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  ttctatacgctcctgctgagaaggagagcaattaagtataaaagacatccaggcactctg 938

                                                                        
Query: 140  tagtatggacctataaccccagcacaggcaggctgaggcaggatgatctggatgccagag 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  tagtatggacctataaccccagcacaggcaggctgaggcaggatgatctggatgccagag 878

                                                                        
Query: 200  cagtctggggtatacagtaattactatcttgagaactaacaatgcttctctaaaactgtg 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  cagtctggggtatacagtaattactatcttgagaactaacaatgcttctctaaaactgtg 818

                                                                        
Query: 260  tgtgcactcatgttaataaataatatgtgtgatgcatatagaaacgtgatttatgtgttt 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  tgtgcactcatgttaataaataatatgtgtgatgcatatagaaacgtgatttatgtgttt 758

                                                                        
Query: 320  atataacggtagaaataaaagaacaactgcccacagcatgcaatcttgttttttacaact 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  atataacggtagaaataaaagaacaactgcccacagcatgcaatcttgttttttacaact 698

                                                                        
Query: 380  aatactcattttaaccacattatcattagaaatatgagtgcgtgttcctttatatttttt 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  aatactcattttaaccacattatcattagaaatatgagtgcgtgttcctttatatttttt 638

                                                                        
Query: 440  atgtgtaatcatcatactgttagtgctcaccttaggctgtgtagagaagaagtaggagaa 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  atgtgtaatcatcatactgttagtgctcaccttaggctgtgtagagaagaagtaggagaa 578

                                                                        
Query: 500  tgacgagatggagatgaagatctcagcaaaaggtttaaactccagcccacacctgagttc 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  tgacgagatggagatgaagatctcagcaaaaggtttaaactccagcccacacctgagttc 518

                                                                        
Query: 560  cttaagtgagatcctggtatccagggaaatggaagagtctcggttcccccactgtgtgat 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517  cttaagtgagatcctggtatccagggaaatggaagagtctcggttcccccactgtgtgat 458

                                                  
Query: 620  atgtggatggtaatgctgaccttatcagacttctgaga 657
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 457  atgtggatggtaatgctgaccttatcagacttctgaga 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)