BAC Information

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BAC

Clone NameMSMg01-494M20
Chromosome12 (Build37)
Map Location 87,267,375 - 87,425,854
singlet/doubletdoublet
Overlap geneTtll5, Tgfb3, 1700019E19Rik
Upstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream gene1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M20.T7 (MSMg01no494_m20.b1)MSMg01-494M20.TJ (MSMg01no494_m20.g1)
ACCAG571995AG571996
length751750
length of high quality
(start - end)
674 (60 - 733)495 (61 - 555)
definitionCHROMAT_FILE: MSMg01no494_m20.b1 PHD_FILE: MSMg01no494_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:44 2005CHROMAT_FILE: MSMg01no494_m20.g1 PHD_FILE: MSMg01no494_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,267,375 - 87,268,048)(87,425,360 - 87,425,854)
sequence
CGCTAAACGACTCACTATTTCGAGAGGAGGCGCGGAATTCTCTGTTTTCT
CATAAAGTCAGACTCGAGACTCTTCCAAGACTAGTCCTTCCTCTATGAAT
TGTAACAAAATCTGGTGTCTGTTGTCTAGCCACACTGTGAAACTAGAATT
ATCATCCAAGATAAAAGGGTCTCTCTCTCTATGAGCTGTGTTAGTAGAAA
GTAAAAACATGATTAAAAATTGCATTCTGCCACCGTTACCTGGGAATTTC
AAAAAATTGCATGAAATGGTGACCAAAAGTAGCTTGTCAAATGTATAGGT
GGTGGAAGTTCAGGAAGAATTAATTAAAGTCTTTACTGTAAGGCACCATT
AACCCAAGGGAGCAAAAGCAAATGAAGCGCATTTATCGGGAGTCAGTTTA
ATTTTGTCGTTCTTCTCTGTGCTTGGACACGGGTAGGAAACAGAACAAAT
GGCTGAAAAGAAATCAAAGAAGAAACTTGAAGAAGAGGAAGAAGATGGGG
TGAACGCAGAAAGCTTTCAGGAGTTTATTCGACAAGCAAGGTACAGACAC
TTTTGATGAGTTAACCATGTCCTTCCCTCTCCTGAGCTGCCACTGAGCCC
CCAACAGCCCCTTGTCTCTGATACACAGATGTGAACGACTTTGGTCCCCA
AGGGAGGGGATGTCTTGCAGGCTTGGCCTCTCCGTATCTCAGCCAGTTGT
GTTGCTGTTGCCATGGCTTCAGTTATCAAAACACTGCTGTGTGGTGTCTG
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTAAACCCTTAGGAGAAAGTACCCAAGTCATTTCTATTT
GGTAGAATTGGAAACATACAGGTTATTGATCATGAGATTTTCAACAGCCA
CAGATGCAGCAAAAACAAAGTCACTGTTCTGTCCATGACACATGGTTAGA
AATGCAGCTAGCCTGGACAGAGAGACCTCAAGCCATATAGCTCCAAGCAG
GTGGGTAAAGGCTCCCACATTCCTAAGCAGGACCTGAGACCGCTAACAGA
CAGGTGTTTATAGAGAATCCTTCAATTCTATGGCAGTTGAGTAATCCAGA
CACCTCTTGCTCTGCTGGTTAGAGGCGCATCTATAGGCGCGGAGGGAGCC
CCACCACAGGAATGCTGAGACGGCACCTTTGGACGCTAAGAACAAGCACC
TCGGGGTTCTGAGTCAACAGATGAAACCTGTGCAGGTGTCCTCAGGCCCC
CCAAGTGGGCAGGGGCTCTGTCTCCAACATTCCCCAGAACAAAAGAAAAC
TCTGAGGCACACGAGTGGGTGCTGACGAGTGCCTGTGCGACCATTTACTT
AGCAAAGCCAAGCCAAACCAGCATCTTCAGGTCTCATTATCGCGGCTGCG
TTCCAGTCTCAAGATGGTATGAATGAACACGGAAACCAATGCCATTTTAT
TAAAAAGGAAACCAAGGCCCACGTTCCGATCAAAATCCTGTGTTCATCTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m20.b1 MSMg01no494_m20.b1 CHROMAT_FILE:
MSMg01no494_m20.b1 PHD_FILE: MSMg01no494_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
         (674 letters)



>mm_chr12_87267175_87268248
          Length = 1074

 Score = 1265 bits (654), Expect = 0.0
 Identities = 669/674 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactcgagactcttccaagactagtccttcctctatgaattgtaacaaaatctggtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactcgagactcttccaagactagtccttcctctatgaattgtaacaaaatctggtgtc 260

                                                                       
Query: 61  tgttgtctagccacactgtgaaactagaattatcatccaagataaaagggtctctctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgtctagccacactgtgaaactagaattatcatccaagataaaagggtctctctctc 320

                                                                       
Query: 121 tatgagctgtgttagtagaaagtaaaaacatgattaaaaattgcattctgccaccgttac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tatgagctgtgttagtagaaagtaaaaacatgattaaaaattgcattctgccactgttac 380

                                                                       
Query: 181 ctgggaatttcaaaaaattgcatgaaatggtgaccaaaagtagcttgtcaaatgtatagg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggaatttcaaaaaattgcatgaaatggtgaccaaaagtagcttgtcaaatgtatagg 440

                                                                       
Query: 241 tggtggaagttcaggaagaattaattaaagtctttactgtaaggcaccattaacccaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtggaagttcaggaagaattaattaaagtctttactgtaaggcaccattaacccaagg 500

                                                                       
Query: 301 gagcaaaagcaaatgaagcgcatttatcgggagtcagtttaattttgtcgttcttctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcaaaagcaaatgaagcgcatttatcgggagtcagtttaattttgtcgttcttctctg 560

                                                                       
Query: 361 tgcttggacacgggtaggaaacagaacaaatggctgaaaagaaatcaaagaagaaacttg 420
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcttggacatgggtaggaaacagaacaaatggctgaaaagaaatcaaagaagaaacttg 620

                                                                       
Query: 421 aagaagaggaagaagatggggtgaacgcagaaagctttcaggagtttattcgacaagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaagaggaagaagatggggtgaacgcagaaagctttcaggagtttattcgacaagcaa 680

                                                                       
Query: 481 ggtacagacacttttgatgagttaaccatgtccttccctctcctgagctgccactgagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtacagacacttttgatgagttaaccatgtccttccctctcctgagctgccactgagcc 740

                                                                       
Query: 541 cccaacagccccttgtctctgatacacagatgtgaacgactttggtccccaagggagggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccaacagccccttgtctctgatacacagatgtgaacgactttggtccccaagggagggg 800

                                                                       
Query: 601 atgtcttgcaggcttggcctctccgtatctcagccagttgtgttgctgttgccatggctt 660
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 atgtcttgcaggcttggcctctccgtttctcagccagttgtgttgctgttgccatggctt 860

                         
Query: 661 cagttatcaaaaca 674
           ||||||||||||||
Sbjct: 861 cagttatcaaaaca 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no494_m20.g1 MSMg01no494_m20.g1 CHROMAT_FILE:
MSMg01no494_m20.g1 PHD_FILE: MSMg01no494_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
         (495 letters)



>mm_chr12_87425160_87426054
          Length = 895

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaaacccttaggagaaagtacccaagtcatttctatttggtagaattggaaacataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cctaaacccttaggagaaagtacccaagtcatttctatttggtagaattggaaacataca 636

                                                                       
Query: 61  ggttattgatcatgagattttcaacagccacagatgcagcaaaaacaaagtcactgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ggttattgatcatgagattttcaacagccacagatgcagcaaaaacaaagtcactgttct 576

                                                                       
Query: 121 gtccatgacacatggttagaaatgcagctagcctggacagagagacctcaagccatatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtccatgacacatggttagaaatgcagctagcctggacagagagacctcaagccatatag 516

                                                                       
Query: 181 ctccaagcaggtgggtaaaggctcccacattcctaagcaggacctgagaccgctaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctccaagcaggtgggtaaaggctcccacattcctaagcaggacctgagaccgctaacaga 456

                                                                       
Query: 241 caggtgtttatagagaatccttcaattctatggcagttgagtaatccagacacctcttgc 300
           |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caggcgttgagagagaatccttcaattctatggcagttgagtaatccagacacctcttgc 396

                                                                       
Query: 301 tctgctggttagaggcgcatctataggcgcggagggagccccaccacaggaatgctgaga 360
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctgctggctagaggcgcatctacaggcgcggagggagccccaccacaggaatgctgaga 336

                                                                       
Query: 361 cggcacctttggacgctaagaacaagcacctcggggttctgagtcaacagatgaaacctg 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cggcacctttggatgctaagaacaagcacctcggggttctgagtcaacagatgaaacctg 276

                                                                       
Query: 421 tgcaggtgtcctcaggccccccaagtgggcaggggctctgtctccaacattccccagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgcaggtgtcctcaggccccccaagtgggcaggggctctgtctccaacattccccagaac 216

                          
Query: 481 aaaagaaaactctga 495
           |||||||||||||||
Sbjct: 215 aaaagaaaactctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)