Query= MSMg01no495_g02.b1 MSMg01no495_g02.b1 CHROMAT_FILE:
MSMg01no495_g02.b1 PHD_FILE: MSMg01no495_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:27 2005
(637 letters)
>mm_chr12_15238168_15239204
Length = 1037
Score = 1089 bits (563), Expect = 0.0
Identities = 623/665 (93%), Gaps = 38/665 (5%)
Strand = Plus / Minus
Query: 5 gaattcttactttgcgatctcttgatgaaaaactataatctattagatgaattatacctt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcttactttgggatctcttgatgaaaaactataatctattagatgaattatacctt 606
Query: 65 ttcctccttagggttttttgttgttgctcgtttgtttgtttgtttgttttgtcattgtat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttcctccttagggttttttgttgttgctcgtttgtttgtttgtttgttttgtcattgtat 546
Query: 125 tgtcacagcaacagaaagaaaacaagatcaaagtccctgaactacctaagacttattgct 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 545 tgtcacagcaacagaaagaaaacaagatcaaagtccctgaactacctaagtcttattgct 486
Query: 185 ccttaaagatacagtcctctaaagctaaatcgcttcactgtcaccccaaataccaagcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccttaaagatacagtcctctaaagctaaatcgcttcactgtcaccccaaataccaagcag 426
Query: 245 tcaatgctcacttcggttctgtaagactttcttttaccagttagaattcttcttacagtg 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 425 tcaatgctcacttcggttctgtaagacttccttttaccagttagaattcttcttacagtg 366
Query: 305 acaaagtacttgacaaaggaaccaggtttggaaggtaggccatcatagaagaaggtcctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acaaagtacttgacaaaggaaccaggtttggaaggtaggccatcatagaagaaggtcctg 306
Query: 365 acagcaggagtgtgaggcagttcatcactatacacagccacagtcaagaatccggctgag 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 305 acagcaggagtgtgaggcagttcatcactatacacagccacagtcaggaatccggctgag 246
Query: 425 atgaatgctggtgattggataacttctctctctatatcgagtcccatac----------- 473
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 245 atgaatgctggtgattggataact----tctctatatcgagtcccatactctacctcatt 190
Query: 474 ----------------tctaccccattggcacataggagtcattcttc-----agataaa 512
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 189 ggcacataggagtcattctaccccattggcacataggagtcattcttcagataagataaa 130
Query: 513 tatttctggatataaacctcccccccctctctcacacacatacagagagagaaagagggg 572
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tatttctggatataaacct-ccccccctctctcacacacatacagagagagaaagagggg 71
Query: 573 agagagagggggggaggaggagacagaagggaagacagagagacaaagacaggggagagg 632
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 agagaga-ggggggaggaggagacagaagggaagacagagagacaaagacaggggagagg 12
Query: 633 gagag 637
|||||
Sbjct: 11 gagag 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_g02.g1 MSMg01no495_g02.g1 CHROMAT_FILE:
MSMg01no495_g02.g1 PHD_FILE: MSMg01no495_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:27 2005
(561 letters)
>mm_chr12_15182175_15183134
Length = 960
Score = 982 bits (508), Expect = 0.0
Identities = 548/562 (97%), Gaps = 3/562 (0%)
Strand = Plus / Plus
Query: 1 gaggtttgagcatatgacttgaggatttcattggtttcaagaacattaaaagcatgttag 60
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 201 gaggtttgagcatatgacttgagaatttcattggtttctagaacattaaaagcatgctag 260
Query: 61 agagaaggtaggaaaacaaatcaccgttcagtttctgctgtattagataatcaaacattg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 agagaaggtaggaaaacaaatcaccgttcagtttctgctgtactagataatcaaacattg 320
Query: 121 taaaaatggccacaatgaatgctgacatttctcagctttctttataggtggtgtgttcct 180
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaatggccacaattaatgttgacatttctcagctttctttataggtggtgtgttcct 380
Query: 181 ttctactctttcatacacaggcacccacgagccatgcagacccatacttaatgctgctgt 240
||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 381 ttctactctttcatacataggcacccatgagccatgcagacccatacttagtgctgctgt 440
Query: 241 ttctaatcagttgtcatattgatacttattaaacattaagcttggaaatttt-cttaatt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ttctaatcagttgtcatattgatacttattaaacattaagcttggaaatttttcttaatt 500
Query: 300 attgtagtacagtcaaaaacaaggagatataaaagatatataaaatgtgcaatttgtaaa 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 attgtagtacagtcaaaaacaaggagatataaaagacatataaaatgtgcaatttgtaaa 560
Query: 360 atgatgaatctctgttaatatgtcttatgaatctactaacatgaaaatgtaaatctatgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatgaatctctgttaatatgtcttatgaatctactaacatgaaaatgtaaatctatgt 620
Query: 420 ctgaattatgcattgttggaagaaaaaaaaagaaagggttctgaccattagaggcagaat 479
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 621 ctgaattatgcattgttggaagaaaaaaa--gcaagggttctgaccattagaggcagaat 678
Query: 480 ataagcactgtaattgctaagacttctttaaccatttttatattacagagattaattttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataagcactgtaattgctaagacttctttaaccatttttatattacagagattaattttg 738
Query: 540 tgttaatgagttttgtgaaaca 561
||||||||||||||||||||||
Sbjct: 739 tgttaatgagttttgtgaaaca 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
