BAC Information

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BAC

Clone NameMSMg01-495J04
Chromosome12 (Build37)
Map Location 3,693,848 - 3,694,030
singlet/doubletsinglet
Overlap geneDtnb
Upstream geneLOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, LOC668197
Downstream geneDnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495J04.T7 (MSMg01no495_j04.b1)MSMg01-495J04.TJ (MSMg01no495_j04.g1)
ACCAG572585AG572586
length767747
length of high quality
(start - end)
145 (97 - 241)183 (118 - 300)
definitionCHROMAT_FILE: MSMg01no495_j04.b1 PHD_FILE: MSMg01no495_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:40 2005CHROMAT_FILE: MSMg01no495_j04.g1 PHD_FILE: MSMg01no495_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCACTTATAATTGCGGCCGCTAAANGAGCCANAATTCAGACTGGCGG
CGCNGGAANCAGCCGTACCTTCAGCCAGAGTACNCANANACAAANAAACA
AATAAATAAATCTCCAAAAATAGTTTTAGAAAAAAAAGTATTAATAAAAA
TTTTATGGCTTGGGGGGAGGGAGCTGTCACCATAACATAAGGAAGTATAT
TAAAAGGTTGCTGAGGTTCTGTGTTTTGTTTGCCTCTNNGGGGNTGGTTN
NGGAATGGCCTGTTTTTGTTTCGNGAATGGCTTTTGNCTTGGGGGAGGCT
TGCAAAACACAGGGGTAGATAAGACTACNCGNNCCCCTTCCTGGGATTTC
TTGGTTTAAACACAACCCCCCCCGAGGGGGGGAGGNAGCGAAAAAAAACC
CCCCAACCCCCATAAATTATAAAAGGAGNCGGCGCTCCCCCCCCCCCCCG
TGGGGTTTCTCTCCCCGGAAAAAAAAAAAGGGGGGCCACGCGGGGCCCCT
GGCGGCANCCCACCCTTAAATAAAAAAAAAACCCTCCCAATGGCGNTTNT
AANCCCAGGCCACAAAATAAAAAAATTTCTNTNCNNGCGGCCCCTCTCCC
CCGCGCAGNNCAATAACCCCCCTTCTCTCCTTCTTTGGTACGACAAAAGG
GGGGAGGGGGGTNTGTGTTNTGATTCCTCCCCCTCTCCCGNCCCCCTTCT
TCCTTCCCCTCCTCCCCCCCCCCTCCNNNCGCTNNNNTCCGGTAGAAGAG
TGACAATGGGGTAGGGG
NCGCAAGAAGNGAGTAAGCNGGCGGNAGCCGATTGGTACTTGTGGNGAAC
NANCCCGTTTANTTCATGGCGCCCNGNGNCCGAAACCAAACTTAAGTTGT
CAAGGTTGTTAGCAAATGCCCCCACCCAATGACCCATCTGTTCAGCCTCT
TTGTTTGTTTTTAATTAATTTATCATGTGTGCACTTGTGCTTACATATGT
ACACATATGTACACACACACATACACAGAGAGATCAAAAGATATTATTAC
ATCAGNTCTCTCCTTCACACTGTTGGCTTTGAGAAGCAAACGAAGGCCAC
CAGGCTTGTTTTTTTTTACANANCCCACCAGAGACAGCACNNGACCCGGA
GTTTTAATTTTATTCTTGCCCTGTAATGTTGGTAAGTTTAGTTTTTTGTT
TGGTTTGCCCCCCCTTGTTGTAAAAGAGTCTTGCTCTATGGCTCAGGCTG
GTCTGGAATGCACAAAAATCGTTCTGTCGGACTCAAAGTGCTAGGGTTGA
AGGTATGAATCACCATATCTACTTAACTGTATTTATTTGAGCACATATGT
GTATGTTTTCATGTGTTCATATGTGTATGGGTACACACATGTGTGTGTTT
ATAGAACCCCAAAGTTGATGTCAGGGGCCTTCCCTGCTCACTCTTTACCT
GTTGAGAAAAGGTCTCCTGCTGAACTCAGGACTCCCCAATTCCAGCGACT
CTAAGCTGCCACCTTGCCCTGGACACCCTTCCAAGGCTCCGGGAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_j04.g1 MSMg01no495_j04.g1 CHROMAT_FILE:
MSMg01no495_j04.g1 PHD_FILE: MSMg01no495_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:40 2005
         (183 letters)



>mm_chr12_3693648_3694234
          Length = 587

 Score =  290 bits (150), Expect = 3e-83
 Identities = 173/183 (94%), Gaps = 4/183 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcccccacccaatgacccatctgttcagcctctttgtttgtttttaattaatttatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcccccacccaatgacccatctgttcagcctctttgtttgtttttaattaatttatcatg 324

                                                                       
Query: 61  tgtgcacttgtgcttacatatgtacacatatgtacacacacaca----tacacagagaga 116
           ||||||||||||||||||||||||||||| ||||||||||||||    ||||||||||||
Sbjct: 323 tgtgcacttgtgcttacatatgtacacatgtgtacacacacacacacatacacagagaga 264

                                                                       
Query: 117 tcaaaagatattattacatcagntctctccttcacactgttggctttgagaagcaaacga 176
           |||||||| |  |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 263 tcaaaagacaccattacatcagttctctccttcacactgttggctttgagaaccaaacga 204

              
Query: 177 agg 179
           |||
Sbjct: 203 agg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 587
Length adjustment: 8
Effective length of query: 175
Effective length of database: 579
Effective search space:   101325
Effective search space used:   101325
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)