BAC Information

Click to search

BAC

Clone NameMSMg01-495M13
Chromosome12 (Build37)
Map Location 102,176,324 - 102,176,874
singlet/doubletsinglet
Overlap gene0610010D24Rik
Upstream geneKcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68
Downstream geneLOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495M13.T7 (MSMg01no495_m13.b1)MSMg01-495M13.TJ (MSMg01no495_m13.g1)
ACCAG572745AG572746
length689753
length of high quality
(start - end)
551 (83 - 633)49 (76 - 124)
definitionCHROMAT_FILE: MSMg01no495_m13.b1 PHD_FILE: MSMg01no495_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:55 2005CHROMAT_FILE: MSMg01no495_m13.g1 PHD_FILE: MSMg01no495_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCGTNNTTNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TTCCGAGGATCCGCGGAATTCTCCATCTGCAGGGAGAGCAGAGAGCCCTG
CGAGTGATCAGGCCGAGGATGACCAGCAACAGCCAGCCTCAGAGGGACCT
CAAGGCAGGCCAGCCGGGGACAGTGCTACCGGAACTTGAGGACTTGGCTT
AGGAAGTGGGGCCAACATGGCAAAACGCTGGCTGCGAGAAGGATATCATC
CTGAGCCAACTCCAGAAATCATGTCCTCCGTCTACGTGAGCCCCTTGCAT
GTCATTACTGATTATTTTTAAAGCCTATTTTCTTGAGTACCAGATAATAC
TGTCAACCAATTGATTTTTACATATTTATTTTTGTGCTGTTGGGGCCTGA
ACCAAGGACCTTGTGTACATGCTAAGCACTTTTATTAACGGGCCACATCT
GACCGCCTGAGTTTTTAAAGTATTCTAACACAACCCCAAGACATTAAAAA
CTGAACAGGGGCCAGAACTGCTCTTATATTAAAACCAGACAAAGACTTTT
TCCAAAACAAAGTAACAAACCAACATCCTATTTTCTTATTTTAACAAAAC
AAACCCAACTTCTCTGCCAAGTAAGTTTCCTGTTTATTGTCTCTGCCCCA
TATGAAACTTTCCAACTTTTCCCAGAAATTACATTATTG
NCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCGAGAGATTCCCATAACATTGGTTTCCTTTTT
GGGTTTTTTTGGGGGGGGGAAGTCCTTCTTTTCTTGGTTTTTGCTTTTAT
ACTTGATAGTAATATTCGAGACAATGTTTCTCTGAGTAGCCCAGTATGTG
CTGAGAAATTCTGTAGACCGCCTGCCGCTGGGAAAAGGAGCTGTTATATT
ATTGTATGACTTTACGATTTGGGAAATAGTTTTTGTTCTTAAAAGATTTA
TAGAGCAAAACTTTGTTTTTTTTTTAGGCGATAGTTATATTTGAAAAAAA
TTGTGGGACAATTAATTTTTAGAAAGAAAGATGATTTGCCTGTTTCCAAT
TATTTTCTAATGCTTCCTTGCACATGTTAATTGGCTAAGACTTTACTTTA
AGTTCATCACAAGATGACTTAATCCTTTATTATATGTTGTCAAGGGAGAC
TGTAAATTAATTGCTGTTAGACAATTAGTTTTTTGAGAAAGTACATTAAG
CTCCTGGAATCCAATGTTTTTCTGCTCAATCTATTTACTGATACTCTACG
TGGCCATTCCTACTTTTTTGGTAATTGTTATATCATTTCGGGTTCATTCT
TCTCTTTTTTTTCAATGTAACCTTTCCCATTTTGCTATTATCAATTTTTT
CGCTCCCTATAACAAAATTACAGGGATATTTACCCATGAATTTTTTTTTT
GCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_m13.b1 MSMg01no495_m13.b1 CHROMAT_FILE:
MSMg01no495_m13.b1 PHD_FILE: MSMg01no495_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:55 2005
         (551 letters)



>mm_chr12_102176124_102177074
          Length = 951

 Score = 1058 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagagcagagagccctgcgagtgatcaggccgaggatgaccagcaacagccagcctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagagcagagagccctgcgagtgatcaggccgaggatgaccagcaacagccagcctcag 260

                                                                       
Query: 61  agggacctcaaggcaggccagccggggacagtgctaccggaacttgaggacttggcttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggacctcaaggcaggccagccggggacagtgctaccggaacttgaggacttggcttag 320

                                                                       
Query: 121 gaagtggggccaacatggcaaaacgctggctgcgagaaggatatcatcctgagccaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtggggccaacatggcaaaacgctggctgcgagaaggatatcatcctgagccaactc 380

                                                                       
Query: 181 cagaaatcatgtcctccgtctacgtgagccccttgcatgtcattactgattatttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaatcatgtcctccgtctacgtgagccccttgcatgtcattactgattatttttaaa 440

                                                                       
Query: 241 gcctattttcttgagtaccagataatactgtcaaccaattgatttttacatatttatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctattttcttgagtaccagataatactgtcaaccaattgatttttacatatttatttt 500

                                                                       
Query: 301 tgtgctgttggggcctgaaccaaggaccttgtgtacatgctaagcacttttattaacggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgctgttggggcctgaaccaaggaccttgtgtacatgctaagcacttttattaacggg 560

                                                                       
Query: 361 ccacatctgaccgcctgagtttttaaagtattctaacacaaccccaagacattaaaaact 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacatctgaccacctgagtttttaaagtattctaacacaaccccaagacattaaaaact 620

                                                                       
Query: 421 gaacaggggccagaactgctcttatattaaaaccagacaaagactttttccaaaacaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacaggggccagaactgctcttatattaaaaccagacaaagactttttccaaaacaaag 680

                                                                       
Query: 481 taacaaaccaacatcctattttcttattttaacaaaacaaacccaacttctctgccaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacaaaccaacatcctattttcttattttaacaaaacaaacccaacttctctgccaagt 740

                      
Query: 541 aagtttcctgt 551
           |||||||||||
Sbjct: 741 aagtttcctgt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)