BAC Information

Click to search

BAC

Clone NameMSMg01-495P10
Chromosome12 (Build37)
Map Location 31,683,265 - 31,683,584
singlet/doubletsinglet
Overlap genenone
Upstream genePxdn, Tpo, Sntg2, Tmem18, LOC100043055, Acp1, Sh3yl1
Downstream geneLOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495P10.T7 (MSMg01no495_p10.b1)MSMg01-495P10.TJ (MSMg01no495_p10.g1)
ACCAG572883AG572884
length728753
length of high quality
(start - end)
322 (328 - 649)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no495_p10.b1 PHD_FILE: MSMg01no495_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:08 2005CHROMAT_FILE: MSMg01no495_p10.g1 PHD_FILE: MSMg01no495_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNATATCTATAAATTGCGGCCGCNAAANGACCCACTTTCAAATCGGAG
CCGCGGAANNCAATAATACGAAAACATCCATCGCNNNAGNCNANATAATT
TCTCTTTTTTGTGTATGTGTACTGCAATCAGGTCCTTTGATGGGTATTAT
TGCACAGAGATAGATGACAGCAAAAGATTCTCAACCCTGCATCTCAGGTC
TGTTCTAAAACTCGACATGTGGTCACATGTTCACATTTGATCAAGAAACA
AATGTTTCTTTGTTTTTGTACATTTCTTGATTTCTATATACTTATTGATC
TCAATTTTACCAGCTTTATTCATTCCTCTTTAACTTTGTCCCTTTCCTTG
ACTTTATAACCCTCAGTTGTGATATTAATTTAAACACTTTCTCGGAGAAC
CTCAGACAACCCCCTCTCTCTTCTGGTTACTTAAACTTCTCATTCTTTAT
CTCTATACATTTTTGTGGGGATGGATTATTTCTCCTGAGTCATCAAAGAA
TCTATTGAAGGCACAGGACACCTCCCCATTGGTACTAAGTAGCCTTTAAA
AGCAAGAGCCCAGGTCAGAAGTAGGCTTTTTTTTTTCCCCTAATGAGACA
CAAAGAATTACCCCGAGGCATAATCAGTTGGAACAAAATCTCTGACTTGT
ATACTTAGGTAGGGCTCAGCTGTGAGCTTTGACCTCAAGATAAAACTGCC
ATTGAATTCTTTCCAGGGCTGTTTTCTG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCACAACAAACAATCTCCATGCTAATGAGGTATCTAGTG
TTTAGCCAATGAGCTTCCCTTCCTGGGCATCCCTTCCTGCAAAAGCTATT
TAATCTCTGGCTCACCCTGAGTAAGATGTATGCTTCTTCATCCACCATGA
AAAAAATGGTTTGGACAAGCAGGGATTGTCTCCATCAAGGATGGGGGGTG
GGTGCTTTGTCATAAAGAGCCTCTTAGATCTCCTCTAGAAGGCTTCTCTT
CCAGCTCCTCCGTACTTTTTTTCTCACTTGGAGCCAAGCCAGATTCTGCC
CCATCCTAGGCTCAGCACAGGCCCTTAGACTTGTTCTCAATTTCTTGCTC
CTGAGCCATGCCGGTGCCCACAGAAGTTTGAGGATCATAGCACCCATCCC
AGATCTCACTGTTTCTTTCCATGAAGAACATGGAGTGGGACCCTTATCCT
TGACTGCATTCTGCCTTCACTGAGCAACATTCCAGCAGTTCTCCAGTCCC
CAGAGGCAAGGCCTGTGGCCCTTGCATTTCACCTTCCCGGAGCAGCGTAT
CACTTGCATTCCGACACCCTAGCAGCAGCGAGGCAGAAATGCATACCTAC
TGAGAATGACCAGATCAGAACGGAGTGTTCTACTAACACATTAGAGTAAG
CATCTCCAGCATCAGTGACAGGGAGAGCATACATGGATGTGATACCTCAG
GCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_p10.b1 MSMg01no495_p10.b1 CHROMAT_FILE:
MSMg01no495_p10.b1 PHD_FILE: MSMg01no495_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:08 2005
         (322 letters)



>mm_chr12_31683065_31683784
          Length = 720

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%), Gaps = 2/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaactttgtccctttccttgactttataaccctcagttgtgatattaatttaaacac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctttaactttgtccctttccttgactttataatcctcagttgtgatattaatttaaacac 260

                                                                       
Query: 61  tttctcggagaacctcagacaaccccctctctcttctggttacttaaacttctcattctt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcagagaacctcagacaaccccctctctcttctggttacttaaacttctcattctt 320

                                                                       
Query: 121 tatctctatacatttttgtggggatggattatttctcctgagtcatcaaagaatctattg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tatctccatacatttttgtggggatggattatttctcctgagtcatcaa-gaatctattg 379

                                                                       
Query: 181 aaggcacaggacacctccccattggtactaagtagcctttaaaagcaagagcccaggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaggcacaggacacctccccattggtactaagtagcctttaaaagcaagagcccaggtca 439

                                                                       
Query: 241 gaagtaggcttttttttttcccctaatgagacacaaagaattaccccgaggcataatcag 300
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagtgggcttttttttttccc-taatgagacacaaagaattaccccgaggcataatcag 498

                                 
Query: 301 ttggaacaaaatctctgacttg 322
           ||||||||||||||||||||||
Sbjct: 499 ttggaacaaaatctctgacttg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 720
Length adjustment: 9
Effective length of query: 313
Effective length of database: 711
Effective search space:   222543
Effective search space used:   222543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)