BAC Information

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BAC

Clone NameMSMg01-496B17
Chromosome12 (Build37)
Map Location 95,820,249 - 95,820,899
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496B17.T7 (MSMg01no496_b17.b1)MSMg01-496B17.TJ (MSMg01no496_b17.g1)
ACCAG572992AG572993
length764761
length of high quality
(start - end)
656 (47 - 702)651 (73 - 723)
definitionCHROMAT_FILE: MSMg01no496_b17.b1 PHD_FILE: MSMg01no496_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:20 2005CHROMAT_FILE: MSMg01no496_b17.g1 PHD_FILE: MSMg01no496_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGTACAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTTGCGGTTCCTCA
GAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATNGAAACTCAG
AAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAA
CAAACACCCATGGA
NCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTA
ATGGGATTATTTGATTTTCTGGAGCCCACCTTCTTGAGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGCCTTTTTGTCTTATTGAAGATGTCTTTTGCCTTACAG
ATGCTCCCTCAGCACAATGTAATATGACATGAGAGAACCAAGACATTTGA
GATCTTACCAGGTTCATGATTATTCTTGGTAGACATTCAGCCTTATAAAA
TATAATACAAATAAACTTATGTTCTATAATAAGCTGTCTAGTCACTGACA
TTTCAGGACTTTTTTTGGAAGTAGAGAAATTCAAACCACAAGAAAGCACC
CTGCTCCTCACCAAAATATTTACATTGCTAGCTGCAATGTCATGTTTCTC
ATATATATTGTAAGCATTTTCCATGTTGGGATTTTTACATTTTCTGTTTT
ATTTTCCTAAATTCTATCAAACCTGCCATCTTTTCTTCTCATTAGTGTTG
GCCTTTGAATAGTGTTCATATTTACAGATATTTAGACATTCTCAATATAG
TACCTTTCTCAGTAATCACAGTCTAGAGTCTTCTACTGACCAGTAAATTA
TAATAAAAGAGACACCTTTACACAGCCCCATCTTAAGTCTCACTGTGTTA
ATGTTGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_b17.g1 MSMg01no496_b17.g1 CHROMAT_FILE:
MSMg01no496_b17.g1 PHD_FILE: MSMg01no496_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:20 2005
         (651 letters)



>mm_chr12_95819870_95820920
          Length = 1051

 Score = 1143 bits (591), Expect = 0.0
 Identities = 636/651 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttgtttagctctgagccccattttttaatgggattatttgattttctggagcccacctt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tttgtttagctctgagccccattttttaatgggattatttgattttctggagcccacctt 971

                                                                        
Query: 61   cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 911

                                                                        
Query: 121  cctttcccaatctgttggtggcctttttgtcttattgaagatgtcttttgccttacagat 180
            ||||||  ||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 910  cctttctgaatttgttggtggcctttttggcttattgaaggtgtcttttgccttacagat 851

                                                                        
Query: 181  gctccctcagcacaatgtaatatgacatgagagaaccaagacatttgagatcttaccagg 240
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 850  gctccctcagcacaatgtaatatgacatgagagaaccaaaacatttgagatcttaccagg 791

                                                                        
Query: 241  ttcatgattattcttggtagacattcagccttataaaatataatacaaataaacttatgt 300
            |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  ttcaggaacattcttggtagacattcagccttataaaatataatacaaataaacttatgt 731

                                                                        
Query: 301  tctataataagctgtctagtcactgacatttcaggactttttttggaagtagagaaattc 360
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 730  tctataataagctgtctagtcactgacattttaggactttttttggaagtagagaaattc 671

                                                                        
Query: 361  aaaccacaagaaagcaccctgctcctcaccaaaatatttacattgctagctgcaatgtca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  aaaccacaagaaagcaccctgctcctcaccaaaatatttacattgctagctgcaatgtca 611

                                                                        
Query: 421  tgtttctcatatatattgtaagcattttccatgttgggatttttacattttctgttttat 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  tgtttctcatatatattgtaagcattttccatgttgggatttttacattttctgttttat 551

                                                                        
Query: 481  tttcctaaattctatcaaacctgccatcttttcttctcattagtgttggcctttgaatag 540
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  tttccttaagtctatcaaacctgccatcttttcttctcattagtgttggcctttgaatag 491

                                                                        
Query: 541  tgttcatatttacagatatttagacattctcaatatagtacctttctcagtaatcacagt 600
            ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 490  tgttcatatttactgatatttagacatgctcaatatagtacctttctcagtaatcacagt 431

                                                               
Query: 601  ctagagtcttctactgaccagtaaattataataaaagagacacctttacac 651
            |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  ctagggtcttctactgaccagtaaattataataaaagagacacctttacac 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)