MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-496B18
Chromosome	12 (Build37)
Map Location	109,581,798 - 109,582,375
singlet/doublet	singlet
Overlap gene	Cyp46a1
Upstream gene	LOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik
Downstream gene	Eml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100041251 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040497 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040497
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC668151 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668151
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Bcl11b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58208 MGI:1929913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Setd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52690 MGI:1289184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccnk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12454 MGI:1276106
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668158 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668158 MGI:3644008
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins

name	1600002O04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214305 MGI:1919265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyp46a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13116 MGI:1341877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eml1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68519 MGI:1915769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Evl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14026 MGI:1194884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Degs2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70059 MGI:1917309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668164 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 512 ESTs, 3 Proteins pseudo : _no_value

name	Yy1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22632 MGI:99150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a29 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214663 MGI:2444911
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI132487 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104910 MGI:2144766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22375 MGI:104630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212198 MGI:3045255
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 2 Proteins

name	BM948371 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380785 MGI:3044626
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 4 Proteins

name	LOC668194 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668194
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC100041251 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263539 GeneID:100041251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041251 transcript_id : XM_001476378.1

name	Bcl11b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120586998 GeneID:58208 MGI:1929913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell leukemia/lymphoma 11B transcript_id : NM_021399.2

name	Bcl11b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120587006 GeneID:58208 MGI:1929913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell leukemia/lymphoma 11B transcript_id : NM_001079883.1

name	Setd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802818 GeneID:52690 MGI:1289184
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SET domain containing 3 transcript_id : NM_028262.2

name	Ccnk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930320 GeneID:12454 MGI:1276106
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin K transcript_id : NM_009832.1

name	EG668158 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263541 GeneID:668158 MGI:3644008
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins product : predicted gene, EG668158 transcript_id : XM_994648.2

name	1600002O04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249063 GeneID:214305 MGI:1919265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1600002O04 gene transcript_id : NM_001044380.1

name	Cyp46a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753589 GeneID:13116 MGI:1341877
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome P450, family 46, subfamily a, polypeptide 1 transcript_id : NM_010010.1

name	Eml1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112807170 GeneID:68519 MGI:1915769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : echinoderm microtubule associated protein like 1 transcript_id : NM_001043336.1

name	Eml1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112807167 GeneID:68519 MGI:1915769
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : echinoderm microtubule associated protein like 1 transcript_id : NM_001043335.1

name	Evl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254643 GeneID:14026 MGI:1194884
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ena-vasodilator stimulated phosphoprotein transcript_id : NM_007965.2

name	Degs2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345826 GeneID:70059 MGI:1917309
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : degenerative spermatocyte homolog 2 (Drosophila), lipid desaturase transcript_id : NM_027299.3

name	Yy1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130338 GeneID:22632 MGI:99150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : YY1 transcription factor transcript_id : NM_009537.3

name	Slc25a29 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370761 GeneID:214663 MGI:2444911
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 transcript_id : NM_181328.3

name	AI132487 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60097913 GeneID:104910 MGI:2144766
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI132487 transcript_id : NM_001012310.1

name	Wars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328205 GeneID:22375 MGI:104630
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tryptophanyl-tRNA synthetase transcript_id : NM_011710.2

name	Wdr25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263513 GeneID:212198 MGI:3045255
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 2 Proteins product : WD repeat domain 25 transcript_id : XM_001474974.1

name	BM948371 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263515 GeneID:380785 MGI:3044626
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 4 Proteins product : expressed sequence BM948371, transcript variant 1 transcript_id : XM_354696.6

name	LOC100041251 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263540 GeneID:100041251
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476428.1

name	Bcl11b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120586999 GeneID:58208 MGI:1929913
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; B-cell lymphoma/leukaemia 11B; COUP-TF interacting protein 2 product : B-cell leukemia/lymphoma 11B isoform b protein_id : NP_067374.2

name	Bcl11b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120587007 GeneID:58208 MGI:1929913
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; B-cell lymphoma/leukaemia 11B; COUP-TF interacting protein 2 product : B-cell leukemia/lymphoma 11B isoform a protein_id : NP_001073352.1

name	Setd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312266 CCDS:CCDS26159.1 GeneID:52690 MGI:1289184
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : SET domain containing 3 protein_id : NP_082538.1

name	Ccnk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930321 GeneID:12454 MGI:1276106
definition	GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA]; GO:0019901 - protein kinase binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000079 - regulation of cyclin-dependent protein kinase activity [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : cyclin K protein_id : NP_033962.1

name	EG668158 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94393134 GeneID:668158 MGI:3644008
definition	codon_start : 1 product : similar to MGC114619 protein protein_id : XP_999742.1

name	1600002O04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249064 GeneID:214305 MGI:1919265
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005044 - scavenger receptor activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC214305 protein_id : NP_001037845.1

name	Cyp46a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753590 CCDS:CCDS26160.1 GeneID:13116 MGI:1341877
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008203 - cholesterol metabolism [Evidence IEA]; GO:0006118 - electron transport [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA] codon_start : 1 note : cytochrome P450, 46 (cholesterol 24-hydroxylase); cholestrol 24-hydroxylase; cytochrome P450, 46a1 (cholesterol 24-hydroxylase) product : cytochrome P450, family 46, subfamily a, polypeptide 1 protein_id : NP_034140.1

name	Eml1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112807168 GeneID:68519 MGI:1915769
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003993 - acid phosphatase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : echinoderm microtubule associated protein like 1 isoform 1 protein_id : NP_001036800.1

name	Eml1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112807171 GeneID:68519 MGI:1915769
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003993 - acid phosphatase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : echinoderm microtubule associated protein like 1 isoform 2 protein_id : NP_001036801.1

name	Evl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254644 CCDS:CCDS26161.1 GeneID:14026 MGI:1194884
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005522 - profilin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017124 - SH3 domain binding [Evidence IDA] GO_process : GO:0030048 - actin filament-based movement [Evidence NAS]; GO:0045010 - actin nucleation [Evidence NAS]; GO:0008154 - actin polymerization and/or depolymerization [Evidence IDA]; GO:0007411 - axon guidance [Evidence NAS]; GO:0051016 - barbed-end actin filament capping [Evidence NAS]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0007399 - nervous system development [Evidence ISS]; GO:0009887 - organ morphogenesis [Evidence ISS]; GO:0030168 - platelet activation [Evidence NAS] codon_start : 1 exception : mismatches in translation product : Ena-vasodilator stimulated phosphoprotein protein_id : NP_031991.2

name	Degs2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754029 CCDS:CCDS26162.1 GeneID:70059 MGI:1917309
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [Evidence IEA]; GO:0000170 - sphingosine hydroxylase activity [Evidence IDA] GO_process : GO:0006636 - fatty acid desaturation [Evidence IEA] codon_start : 1 product : sphingolipid delta 4 desaturase/C-4 hydroxylase protein_id : NP_081575.2

name	Yy1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982421 CCDS:CCDS26163.1 GeneID:22632 MGI:99150
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0031519 - PcG protein complex [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP] [Evidence IGI]; GO:0048595 - eye morphogenesis (sensu Mammalia) [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : UCRBP transcription factor; delta transcription factor; Yin Yang 1 product : YY1 transcription factor protein_id : NP_033563.2

name	Slc25a29 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31044469 CCDS:CCDS26164.1 GeneID:214663 MGI:2444911
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0015227 - acyl carnitine transporter activity [Evidence IDA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006844 - acyl carnitine transport [Evidence IDA] codon_start : 1 product : solute carrier family 25, member 29 protein_id : NP_851845.1

name	AI132487 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60097914 CCDS:CCDS26165.1 GeneID:104910 MGI:2144766
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mitochondrial hepatocellular carcinoma-downregulated carrier protein protein_id : NP_001012310.1

name	Wars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328206 CCDS:CCDS26166.1 GeneID:22375 MGI:104630
definition	GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : tryptophanyl-tRNA synthetase protein_id : NP_035840.2

name	Wdr25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263514 GeneID:212198 MGI:3045255
definition	codon_start : 1 product : WD repeat domain 25 protein_id : XP_001475024.1

name	BM948371 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263516 GeneID:380785 MGI:3044626
definition	codon_start : 1 product : similar to Brain-enriched guanylate kinase-associated protein isoform 1 protein_id : XP_354696.6

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 1 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 2 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 3 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 4 pseudo : _no_value

name	LOC668151 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668151
definition	number : 1 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 5 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 6 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 7 pseudo : _no_value

name	LOC100040497 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040497
definition	number : 8 pseudo : _no_value

name	LOC668194 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668194
definition	number : 1 pseudo : _no_value

name	LOC668194 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668194
definition	number : 2 pseudo : _no_value

name	LOC668164 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263542 GeneID:668164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 512 ESTs, 3 Proteins product : similar to H3 histone, family 3A pseudo : _no_value transcript_id : XR_032875.1

clone name	MSMg01-317P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403N09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-082O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132H12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-496B18.T7 (MSMg01no496_b18.b1)	MSMg01-496B18.TJ (MSMg01no496_b18.g1)
ACC	AG572994	AG572995
length	782	1,170
length of high quality (start - end)	588 (44 - 631)	---
definition	CHROMAT_FILE: MSMg01no496_b18.b1 PHD_FILE: MSMg01no496_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:20 2005	CHROMAT_FILE: MSMg01no496_b18.g1 PHD_FILE: MSMg01no496_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:20 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NAATTATACCTTGTGTCGCTAAACGACTCATTTCGGAGAGGATCCGCGGA ATTCAAAGACTGCCTGGCCTACATAGTGATTTCCAGGTCAGTCCAAGCTA CAGAGTGAGACTCTGTCTCAAAAAAAAAGATTTTTTTTTTTTGGGTTATT GTTTACTTCTTTAAAGAGTACCAGACTTCAGCTTGACAAGTGACTTGCTT GCAGACGAGTCTGGTCTTTTCCAGTCTCTCTTGAAGGTCTGTAGTGTAGG CTAGAACAGGCTTGACTCCAGGCTGGGCCAGCCCCTCCAAAAGGGAATTG CTACCCGCAGCCTCTCCTGAGGACTTCGTGTCTGAGGCTGGTGTGTTCTG GCAAGGACAACGTCAACCACCTGTGGTGTGTCTGAACCCTGAGAGCCTCA AAGCTGACGGCTGCTCATTCATTCTGCTAGCTCAGATCATGCAGTGTCAC CGTGTATGCATACACACACAGCATGTTCATGCAGTGCTCAGGACTTGTGT AGAGGGACTCTTTCTACATATAGCTCTCTTCCAGGATGCTGGCCTGAAAC TGCCAGCCTCCCGCAGCCTAGCCGGAGCCTGACGTCTTTCTGCCCCACTT AGCATGGCTGCTGGGCTATATCTGGGTCTCCATTAGTGTCTTTGTCCTGG AATTGACTGGGCAGAATCTAGAGTAGCCCTTTGTCACCGTGCTCTCCCTC GNCTTGCTCTTCTGTCTTTTCAGNACACATTTTGACGTGTCTCGTCCAAG CATCTGACACCAATTTCATTTTGCCAGTTTTG	TCGCTGTTTTGGNNCTGTGTTGGGGGGGGTCCCGTTTCCCTATAATTTAT TTTGATACAAGAGCAAGATCCTCGAGAGAAAATTCGAGTACACATAGCCG AAATAAATATGCATATAACAAATCTATATTACCTCCATCATCACCCATGA TAATAAAAACTATAAAATTGTATTTCCTTCATTCATCTACTTAGAGACTC CATCCCGCAACTTCTATTCTCCTCGCGCGGGCGCTGGTTCGGAGCTGATA TTTGTTTCTTCCCATCTCCGTGTATGTTGTCGCCTTCTTGCCGATACGTT TACTTCATCGTATTAGTCGTATGTTCAGTGCCGGCGCTGCGAATATAAAC TATCATAAAGAAGAAAATGTATGTATATTACCTCTCAAGCCACATTTGAT CCAGAGCTATTCATAGACGTCAATAGAAGTAGAATATATAACAAAAACAA AAACACAGTTAACCGTCCGACGGAGAGAGTAACTATAGTGCATACTAATT TGTATGGCTTTGTAATTAATTACTCTGGTTTGACGCGGTGTCTCTATCTT TCCTACCTTGCGTCGCTACTCACTCGGGTTTCCCCTGGCTTCGCTTATAT TGCGCTCTCCCTCGTCGCAACGTAACGACGCGATTAGTGTCGATATATTA TTGTTTGTGTATACGTCGCTCCCTACCTGTCGCCATTGACACGGTACTCA TATATATCATCCAGACAGAATATTGTGATAATCACCGCTAGGTTATTATC AGTATGCACCGCGCGCACCATTCATCGCTATCAATCGTGATTCTATAATT TCGATAACCCTGTCTATTGTTCCCCCGTGACGACCCTTCGATTCATAAGT TTCGCTGTTACCTGTCACTCTTGCCTAGACGTTTTCTATTAGTATACATA TGTTGCGATATTAAGAACTCAGTTTCGTACGATTTTATACTCTGTTCCCT TCACCAACCGCAATTACTATTTGCCGACTCACATATAGACATCCAACGAT CTGATTTATTGTNTACTGATTGCTCCGCGACCNGTTAACTGAGTNATTAT GAGCTNCGTCACGCTTGCGATGATACCGTGCGGCGCTCTATATGTTGTTC ACCCGCGACTCAAAATGCTTCGCCTGATAAAATATAATAAGATAGTGTGA GGTGATACTAGATTAAGGCG
quality values	Open. Hide. 0 3 7 8 11 8 8 9 10 10 8 8 8 8 8 8 8 12 17 15 8 8 8 21 21 41 21 19 8 8 6 6 7 7 8 8 11 12 12 21 15 13 12 10 19 25 41 59 36 36 33 33 39 37 33 21 21 11 9 11 9 11 11 22 24 30 39 41 41 33 33 37 33 33 36 59 53 53 53 53 53 42 47 47 47 47 47 53 53 53 53 47 47 47 47 47 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 50 50 47 57 57 57 68 68 68 68 68 57 57 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 57 52 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 57 57 57 59 59 59 59 68 59 57 57 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 68 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 62 62 62 57 52 52 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 59 68 68 68 68 68 59 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 59 59 59 59 59 59 57 57 57 59 57 68 68 68 68 68 57 57 57 57 54 57 57 57 57 54 54 59 59 68 59 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 59 59 59 59 59 57 59 43 57 43 57 57 59 59 59 48 48 59 59 48 48 54 59 57 57 57 57 54 57 57 59 59 59 59 54 59 48 57 48 57 57 57 48 48 48 57 59 59 48 48 48 57 57 59 59 48 48 59 59 47 59 47 39 31 25 29 34 34 39 41 59 59 59 59 47 47 39 47 43 57 48 48 48 48 57 57 50 48 48 48 48 48 48 57 57 48 47 47 43 47 48 48 48 48 57 48 48 43 43 40 40 41 41 34 39 37 32 32 41 59 59 59 47 47 47 46 41 41 43 41 32 32 39 43 47 47 36 39 36 35 31 27 32 20 20 18 28 27 28 23 23 20 28 34 34 33 28 28 34 37 32 32 35 32 32 35 28 28 43 31 31 31 21 21 13 13 13 28 30 32 28 28 28 28 28 32 29 29 31 34 33 31 31 31 37 37 37 29 36 16 21 11 19 15 18 18 12 17 12 12 12 12 12 13 22 22 29 28 23 19 19 23 24 22 24 14 14 14 24 24 30 30 18 18 18 19 10 10 10 11 13 13 15 11 11 11 12 8 8 8 8 8 8 10 11 11 13 13 15 15 11 13 10 10 11 12 11 12 9 10 10 8 8 8 3 0 3 14 12 11 8 8 8 8 8 8 10 10 10 10 14 14 33 15 15 12 3 0 3 12 12 17 17 22 22 12 11 9 9 9 9 10 10 11 11 15 15 11 12 12 16 16 12 11 10 10 10 10 10 18 11 11 11 14 12 11 11 11 13 13 14 14 12 9 8 9 8 8 8 15 20 17 8 7 10 7	Open. Hide. 8 8 8 8 8 8 9 7 8 6 6 3 0 0 3 8 6 6 6 8 8 8 10 10 9 10 10 10 10 10 8 8 7 9 10 11 11 12 10 10 8 8 6 6 6 6 8 8 8 9 9 8 16 10 14 12 12 10 8 6 6 6 6 8 8 9 9 9 9 9 10 10 10 8 10 7 7 8 8 11 16 12 8 8 6 6 8 6 8 8 8 10 10 6 6 8 8 8 9 9 8 8 6 6 8 10 10 10 8 8 6 6 6 8 8 12 10 10 12 9 9 8 8 8 8 6 6 8 8 8 8 8 8 10 11 9 9 9 10 8 8 8 8 8 8 8 11 8 8 8 8 9 9 11 12 14 12 12 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 13 13 17 18 15 12 10 10 10 9 9 9 9 9 9 10 9 10 10 8 8 8 9 8 8 8 8 8 8 7 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 8 8 8 8 8 8 10 10 10 9 9 9 9 9 9 11 13 13 11 10 9 9 8 8 8 8 8 13 6 6 8 6 9 9 9 9 10 9 10 10 8 8 8 8 8 10 10 8 6 6 8 8 9 9 8 8 8 6 8 8 8 8 8 9 8 6 6 7 6 8 8 8 8 8 9 12 12 11 10 10 15 10 8 6 6 10 10 10 8 8 10 8 8 8 6 10 8 10 8 8 9 9 9 9 8 8 8 8 10 10 10 9 9 10 10 10 9 9 8 8 10 8 8 8 8 8 8 7 8 8 10 8 8 8 8 8 8 9 12 12 12 8 8 7 7 8 8 12 8 8 8 8 8 10 8 8 8 6 6 6 6 6 8 8 9 9 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 10 10 10 11 9 9 10 8 8 8 9 9 9 11 11 11 7 6 6 6 6 9 10 13 8 8 8 8 8 8 12 10 8 8 8 8 8 7 9 6 8 8 8 8 6 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 9 9 9 10 10 9 8 8 8 8 8 8 11 13 11 12 13 10 8 8 9 8 9 9 9 9 11 10 10 7 7 8 6 11 8 8 8 10 8 8 8 11 8 8 8 8 8 8 8 8 9 9 10 14 8 8 6 6 8 8 10 10 13 13 18 19 17 10 10 8 8 8 8 12 10 10 10 10 8 8 8 8 8 8 9 9 8 8 12 10 10 10 12 8 8 8 8 8 8 9 8 8 6 6 6 8 8 9 8 8 9 10 10 10 10 10 8 8 8 8 8 8 11 11 9 9 9 11 12 10 8 8 6 6 6 6 7 10 10 8 8 8 8 8 8 6 6 8 6 8 7 7 9 9 11 11 11 10 10 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 6 8 6 6 6 8 8 9 9 9 9 10 9 9 10 10 10 8 8 8 8 12 12 11 11 8 8 6 6 8 8 8 8 8 8 8 8 9 9 8 8 8 8 8 6 6 8 8 8 8 8 11 11 10 9 10 8 8 8 8 8 8 8 10 15 9 6 8 6 7 7 10 10 8 8 6 6 6 6 8 8 9 9 9 10 11 10 10 10 10 10 8 8 6 6 8 8 8 8 8 8 8 8 8 8 12 11 14 10 9 11 8 10 10 13 6 6 7 7 7 7 10 10 8 8 6 6 6 6 6 6 6 6 15 10 8 8 8 8 10 9 8 7 7 7 7 7 8 6 8 6 6 8 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 6 8 8 10 6 6 6 6 6 6 11 10 9 6 6 6 6 7 6 6 10 8 8 8 8 8 8 8 8 7 6 6 6 6 8 8 8 6 6 6 6 10 10 10 8 8 6 6 8 6 6 7 7 8 16 15 15 12 12 9 11 11 10 9 10 8 7 7 8 10 8 8 8 8 10 9 10 7 6 6 6 8 8 8 8 8 8 10 8 8 8 8 10 10 9 8 8 8 8 8 6 10 6 6 6 6 8 8 8 8 8 6 6 6 6 6 6 8 8 6 6 6 6 6 6 8 8 6 6 8 6 6 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 8 8 8 8 6 6 8 8 10 8 8 8 8 10 9 8 8 8 12 9 9 9 3 0 3 6 8 8 8 6 6 8 8 7 6 6 8 8 6 6 6 6 3 0 3 10 7 8 6 6 8 8 10 9 3 0 3 8 10 9 8 8 9 9 9 3 0 3 10 9 9 7 8 8 6 6 6 10 9 9 9 6 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 9 9 9 13 9 8 6 6 8 8 8 10 9 8 8 8 8 10 12 7 7 6 6 8 8 10 8 8 12 11 11 11 8 8 6 6 6 8 8 6 6 6 11 7 6 6 6 6 6 8 9 9 7 7 7 8 8 8 8 8 8 9 9 10 11 8 8 8 6 6 6 6 8 10 12 7 7 6 6 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no496_b18.b1 MSMg01no496_b18.b1 CHROMAT_FILE:
MSMg01no496_b18.b1 PHD_FILE: MSMg01no496_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:20 2005
         (588 letters)



>mm_chr12_109581589_109582575
          Length = 987

 Score = 1052 bits (544), Expect = 0.0
 Identities = 572/584 (97%), Gaps = 7/584 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaagactgcctggcctacatagtgatttccaggtcagtccaagctacagagtga 65
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcaaagacagcctggcctacatagtgatttccaggtcagtccaagctacagagtga 269

                                                                       
Query: 66  gactctgtctcaaaaaaaaa-gattttttttttttgggttattgtttacttctttaaaga 124
           |||||||||||||||||||| |||||||||     |||||||||||||||||||||||||
Sbjct: 270 gactctgtctcaaaaaaaaaagattttttt-----gggttattgtttacttctttaaaga 324

                                                                       
Query: 125 gtaccagacttcagcttgacaagtgacttgcttgcagacgagtctggtcttttccagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 gtaccagacttcagcttgacaagtgacttgcttgcagacgagtctggtcttttccagcct 384

                                                                       
Query: 185 ctcttgaaggtctgtagtgtaggctagaacaggcttgactccaggctgggccagcccctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcttgaaggtctgtagtgtaggctagaacaggcttgactccaggctgggccagcccctc 444

                                                                       
Query: 245 caaaagggaattgctacccgcagcctctcctgaggacttcgtgtctgaggctggtgtgtt 304
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 445 caaaagggaattgctacccgcagcctctcctgaggaatt-gtgtctgaggctggtgtgtt 503

                                                                       
Query: 305 ctggcaaggacaacgtcaaccacctgtggtgtgtctgaaccctgagagcctcaaagctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 ctggcaaggacaacgtcaaccacctgtggtgtgtctgaaccctgagaacctcaaagctga 563

                                                                       
Query: 365 cggctgctcattcattctgctagctcagatcatgcagtgtcaccgtgtatgcatacacac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cggctgctcattcattctgctagctcagatcatgcagtgtcaccgtgtatgcatacacac 623

                                                                       
Query: 425 acagcatgttcatgcagtgctcaggacttgtgtagagggactctttctacatatagctct 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 acagcatgttcatgcagtgctcaggactcgtgtagagggactctttctacatatagctct 683

                                                                       
Query: 485 cttccaggatgctggcctgaaactgccagcctcccgcagcctagccggagcctgacgtct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttccaggatgctggcctgaaactgccagcctcccgcagcctagccggagcctgacgtct 743

                                                       
Query: 545 ttctgccccacttagcatggctgctgggctatatctgggtctcc 588
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttctgccccacttagcatggctgctgggctatatctgggtctcc 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space:   564706
Effective search space used:   564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information