NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTATATTTCTAATAAATTCAGTTTATTTATTTATTTC
AGAAAAATATCTAGTGATTATGTGTATACATGTTAATATTTATTATACAT
TTAGAGGTTTGACATATTGAGTGATATCTTACGATATTTAAGTTGAGATG
CAAACTAATGATCAACCTCGTATTTCCAAATCTTAGTGTGCAAAGACAGA
AGTGATGTATAGAAGCAAATATTTTAAAATATTTAATAGGTAGGAGAATA
AGTCACCAGACTGTAAACAGAAAAACTAAACAAACTAAAATATTTCACTT
CAGCTAAACATTATTTTCAACCATCAAAGGCTTGCAAAGAAACCTAAGAT
ATTTGGAGATCAATGTTATAAAATATTTATAGAAGAGAAGCATATCTCAA
CTCAGAAGTTGCAATCTTAAGGAGCTTAGGTTATATATATATATATATAT
GCCAGTTTCCTAAATTTGTAAACAAAATGAAGACAATAACAACAAAATAA
AATTCCTGGAAAAGGCATTGTGTATAAGATTCTTAAGGAAAGTGATATTA
TTGGCTTTGAAGACAATCTTGGCTAAAGTTATGTAAAAATCTAGTTTCTA
TGAAACAATGCTATTCAGTCAGCCTATGCTGATACTTTTGTGTGGTCAGT
TGACATGTCATTTCTGGACTCTACTATGCATGAAGAAAAAAGN

AAATTTTCAAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGGCTATTTTTAC
TTCAGAACTATTCACTAAGGAGCAGAAGCACAAACAACCCAAGTCTTTAC
TAAGTGATGAAGTAATGAATGGTTCTCTACCAGATAATAAAAAAAAACAA
GTAAAGGATGAAATTGTTAGTTGCAGCAGCATGTATGGAAACAGACATCA
AATTACCAGGTTAAACTGAGTACAGGAGGCACGGGAGGACAAGTTCAGTA
TAGTTTTTCTCACATGTGGAAACAAAAATCATTGATGTCATAGACACTGA
AAGTAAAATGGTGATTTTCAGAGACCAGGGAGAGAAAGGGAAAGAGAATT
ATTGATGAAATGGTGAGTATCAGCAGTGTAGGAGGAATAAATTTTGTTGT
GCATTTCCACGTGGTTATTGCTTTAGACAACAGTAACATATCCTTTGTTG
AAAAGATAGGATTTCCCTGGAAATTTTGCAAACATAAAGAAATGATAAGT
TTGGGCAGTGGTGGCACATGCCTGTAATCCCAGCACGTGGTAGGCAGAGG
AAGGTGGCTTTCTGAGTTCAAGGCCAGCCTAGTCTACAGCATGAGTTCCA
GGACAGCCAGGACTGCACAGAGAAACCCTGTCTCTNAAAAAAAAAAAAAA
AAAAAGAAAGAAAAGAAAGAAAAAAAGAAAAGAAATGATAAATATTT

Query= MSMg01no496_f02.b1 MSMg01no496_f02.b1 CHROMAT_FILE:
MSMg01no496_f02.b1 PHD_FILE: MSMg01no496_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:36 2005
         (685 letters)



>mm_chr12_64433075_64434158
          Length = 1084

 Score = 1151 bits (595), Expect = 0.0
 Identities = 668/713 (93%), Gaps = 33/713 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttatatttctaataaattcagtttatttatttatttcagaaaaatatctagtg 64
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 173 gaattccttaaatttctaataaattcagcttatttatttatttcagaaaaatatctagtg 232

                                                                       
Query: 65  attatgtgtatacatgttaatatttattatacatttagaggtttgacatattgagtgata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 attatgtgtatacatgttaatatttattatacatttagaggtttgacatattgagtgata 292

                                                                       
Query: 125 tcttacgatatttaagttgagatgcaaactaatgatcaacctcgtatttccaaatcttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcttacgatatttaagttgagatgcaaactaatgatcaacctcgtatttccaaatcttag 352

                                                                       
Query: 185 tgtgcaaagacagaagtgatgtatagaagcaaatattttaaaatatttaataggtaggag 244
           |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 353 tgtgcaaagacagaagtgatatatagaagcaaatatttaaaaatattaaataggtaggag 412

                                                                       
Query: 245 aataagtcaccagactgtaaacagaaaaactaaacaaactaaaatatttcacttcagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aataagtcaccagactgtaaacagaaaaactaaacaaactaaaatatttcacttcagcta 472

                                                                       
Query: 305 aacattattttcaaccatcaaaggcttgcaaagaaacctaagatatttggagatcaatgt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 473 aacattattttcaaccatcaaaggcttgcaaagaaacctaagatatttggagatcaatat 532

                                                                       
Query: 365 tataaaatatttatagaagagaagcatatctcaactcagaagttgcaatcttaaggagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tataaaatatttatagaagagaagcatatctcaactcagaagttgcaatcttaaggagct 592

                                                                       
Query: 425 taggtt--------------------------------atatatatatatatatatgcca 452
           ||||||                                ||||||||||||||||||||||
Sbjct: 593 taggttttatatatatatatatatatatatatatatatatatatatatatatatatgcca 652

                                                                       
Query: 453 gtttcctaaatttgtaaacaaaatgaagacaataacaacaaaataaaattcctggaaaag 512
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtttcctagatttgtaaacaaaa-gaagacaataacaacaaaataaaattcctggaaaag 711

                                                                       
Query: 513 gcattgtgtataagattcttaaggaaagtgatattattggctttgaagacaatcttggct 572
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcatggtgtataagattctcaaggaaagtgatattattggctttgaagacaatcttggct 771

                                                                       
Query: 573 aaagttatgtaaaaatctagtttctatgaaacaatgctattcagtcagcctatgctgata 632
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaggttatataaaaatctagtttctatgaaacaatgctattcagtcagcctatgctgata 831

                                                                
Query: 633 cttttgtgtggtcagttgacatgtcatttctggactctactatgcatgaagaa 685
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 832 cttttgtgtggtcagttgacatgtcatttctggactctactatgcatggagaa 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space:   724950
Effective search space used:   724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)