BAC Information

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BAC

Clone NameMSMg01-496J12
Chromosome12 (Build37)
Map Location 114,428,568 - 114,428,900
singlet/doubletsinglet
Overlap genenone
Upstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
Downstream geneIgh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496J12.T7 (MSMg01no496_j12.b1)MSMg01-496J12.TJ (MSMg01no496_j12.g1)
ACCAG573362AG573363
length775772
length of high quality
(start - end)		600 (72 - 671)333 (325 - 657)
definitionCHROMAT_FILE: MSMg01no496_j12.b1 PHD_FILE: MSMg01no496_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:58 2005CHROMAT_FILE: MSMg01no496_j12.g1 PHD_FILE: MSMg01no496_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGGAGTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTGACTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTTG
CCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATT
TTATGAGGTCCCATTTATCGATTCTCGATCTTAAAGCACAAGCCATTGCT
GTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCTT
TAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATT
CGCATTTTTCTACATGATAATCGCCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCAT
TGGTCTACTTGTCTGTCACTATACCAATACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTACAGCTTTAGGTCACGCATAGTGATTCCACCAGAGGTTC
TTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCACA
TGAATCTGCCGATTGCCTTTCTTAT

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGACCTTGGAGTGTTTCTCTGTG
GCATCTGGGGGAGGGACCTTCATGAGGCTGTTTGGGGAGCCTTACCTGTG
AGAGGTGAGGGTCACATAGATTCCTGACCCGGCATCTGCAGTGCCATGCA
GACCTACGGCCTGCCAGGCCTGCGTTCACTGCATTGCCCGGTCCCTTACA
TTCACCTCCCCTGAAGCGAGGATCCACGCCCTGCGATCCGGACGGAGCAA
GGGTTTTGCTGTCCAGTCTTTCTTCTGGTTGTAGAGGGGTGTAGACCAGA
CCCAGTTGTATACAGTAGGGTAGCTCCGTTCCTGTGCCCACTTCTGGATG
CACCGGCTGCTCCCTTCTCTACCCAGGGAGCTGCTTCGCTGAGTCTGGAC
TTGGAGTCACCTGTTTTGCAGGCAGCTGTCCTTGGAGATCATTCTCTCCA
CGGGTACAGGGGCCACTCATGGCTACACCCCTGACCCGGTGGAGTACGGC
AGTGCCTCTCTGCCTGCCCTACTGAGCTTTGTCTCCGCTACTGATCACAG
TGCCTGATGAGCATCCTGAAAACCTTGGCTTTGGGTTCCACACTCCCATG
ACACCGCAATCCACCGACAGGCCTTAGAGAGTGGAGGCCTATGGTATACA
GGGCAGAAAACCTGTGAAGTACACATGGGGGGTGGCTTCCGGGTATTCCT
CAGCTAATAAGCAGACCCAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_j12.g1 MSMg01no496_j12.g1 CHROMAT_FILE:
MSMg01no496_j12.g1 PHD_FILE: MSMg01no496_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:58 2005
         (333 letters)



>mm_chr12_114428368_114429100
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggttgtagaggggtgtagaccagacccagttgtatacagtagggtagctccgttcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggttgtagaggggtgtagaccagacccagttgtatacagtagggtagctccgttcctg 260

                                                                       
Query: 61  tgcccacttctggatgcaccggctgctcccttctctacccagggagctgcttcgctgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcccacttctggatgcaccggctgctcccttctctacccagggagctgcttcgctgagt 320

                                                                       
Query: 121 ctggacttggagtcacctgttttgcaggcagctgtccttggagatcattctctccacggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggacttggagtcacctgttttgcaggcagctgtccttggagatcattctctccacggg 380

                                                                       
Query: 181 tacaggggccactcatggctacacccctgacccggtggagtacggcagtgcctctctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaggggccactcatggctacacccctgacccggtggagtacggcagtgcctctctgcc 440

                                                                       
Query: 241 tgccctactgagctttgtctccgctactgatcacagtgcctgatgagcatcctgaaaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccctactgagctttgtctccgctactgatcacagtgcctgatgagcatcctgaaaacc 500

                                            
Query: 301 ttggctttgggttccacactcccatgacaccgc 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 ttggctttgggttccacactcccatgacaccgc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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