Query= MSMg01no498_a23.b1 MSMg01no498_a23.b1 CHROMAT_FILE:
MSMg01no498_a23.b1 PHD_FILE: MSMg01no498_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:57 2005
(474 letters)
>mm_chr12_13111535_13112405
Length = 871
Score = 698 bits (361), Expect = 0.0
Identities = 393/405 (97%), Gaps = 4/405 (0%)
Strand = Plus / Minus
Query: 5 gaattctctttgttactcctgggaggtttatcatatgtgtggctatcccaagagctaaag 64
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 401 gaattctctttgttactccttggaggtttatcatatgtgtggccatcccaagagctaaag 342
Query: 65 atgagcccaagggcgaacacacaggccatgagaaaagatgattttggatcctttgagaca 124
||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct: 341 atgagcccaagggcgaacacacaggtcatgagaaaagatgattttgga---tttgtgaca 285
Query: 125 tgattggtcagatggtgcccttagtaagcagagttttactgccagtaactgagttgatac 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgattggtcagatggtacccttagtaagcagagttttactgccagtaactgagttgatac 225
Query: 185 tggtccataagggaggaaaggaggccaagtagatagcctagtggctaaaatgtttgcctt 244
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 224 tggtccataagggaggaaaggaggccaagtagatagcctagtggctaaagtatttgcctt 165
Query: 245 gcacatgagagagcctgagttttaagctccagaacccatgtttctttgctttttttgttt 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gcaaatgagagagcctgagttttaagctccagaacccatgtttctttgctttttttgttt 105
Query: 305 tgtttttgtttttgtttttgttttgttaaagctgatcactgtgccatgttgcccagatct 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tgtttttgtttttgtttt-gttttgttaaagctgatcactgtgccatgttgcccagatct 46
Query: 365 ggagagggagagataaaaggattcctgggacaagttagcaagctc 409
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ggagagggagagataaaaggattcctgggacaagttagcaagctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 871
Length adjustment: 10
Effective length of query: 464
Effective length of database: 861
Effective search space: 399504
Effective search space used: 399504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_a23.g1 MSMg01no498_a23.g1 CHROMAT_FILE:
MSMg01no498_a23.g1 PHD_FILE: MSMg01no498_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:57 2005
(466 letters)
>mm_chr12_12929154_12930017
Length = 864
Score = 808 bits (418), Expect = 0.0
Identities = 455/470 (96%), Gaps = 8/470 (1%)
Strand = Plus / Plus
Query: 1 aggagatggcctggcaagaacagatagcaaacagtccaccaagctgagcccctgctatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aggagatggcctggcaagaacagatagcaaacagtccaccaagctgagcccctgctatgg 258
Query: 61 actggatctattgaagctgaccttaggggcttgcagatataatcattgtagatgaggtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actggatctattgaagctgaccttaggggcttgcagatataatcattgtagatgaggtca 318
Query: 121 aactggggtaggtagggctgacttctaacctggtataactgacatccttttaaaaaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aactggggtaggtagggctgacttctaacctggtataactgacatccttttaaaaaagga 378
Query: 181 ggagctgggggtggtggcacatgcctttaatcccagcactttctgagttcgaggccagcc 240
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct: 379 ggagctgggggtggtggcacacgcctttaatcccaacactttctgagttcaaggccagcc 438
Query: 241 tggtctacaaagtgagttccaggacagccagggctacagagaaaccctgtctcagaaaaa 300
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 ttgtctacaaagtgagttccaggacagccagggctacagagaaaccctgtcttggaaaaa 498
Query: 301 aaa---gggggggggggaggaaaggaaggaaggaagctggatagaaacagtaaacagtcc 357
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaaaaggggggggggg--ga--ggaaggaaggaagctggatagaaacagtaaacagtcc 554
Query: 358 tatttgagaaaaaa-tgccaccagaagacagaggcaaggatgcaaacacaaacactaagg 416
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tatttgagaaaaaaatgtcaccagaagacagaggcaaggatgcaaacacaaacactaagg 614
Query: 417 actaccagctgcccacagaagtaggagaaggttgtaaaagattctccctc 466
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 actaccagctgcccacagaagtaggagaaggttgtaaaagattctccctc 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space: 389424
Effective search space used: 389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
