BAC Information

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BAC

Clone NameMSMg01-498D13
Chromosome12 (Build37)
Map Location 105,760,790 - 105,761,211
singlet/doubletsinglet
Overlap genenone
Upstream gene8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498D13.T7 (MSMg01no498_d13.b1)MSMg01-498D13.TJ (MSMg01no498_d13.g1)
ACCAG574599AG574600
length757752
length of high quality
(start - end)
678 (78 - 755)422 (328 - 749)
definitionCHROMAT_FILE: MSMg01no498_d13.b1 PHD_FILE: MSMg01no498_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:10 2005CHROMAT_FILE: MSMg01no498_d13.g1 PHD_FILE: MSMg01no498_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCATGAGATTCCCAAAACTCTGTACCAGACTGAGGCCTTCACA
GCAGACTTCCAGCAGCCTACTGAGGCCACAAAGCTCATCAATGACTATGT
GAGCAATCAGACCCAGGGGATGATCAAGAAACTGATCTCAGAACTGGATG
ATAGGACATTGATGGTGCTGGTGAATTACATCTACTTTAAAGGTGAGAGA
GGTCACTACTTAGGAGTGGAGGGAAAGGATCCGGGCTGCGTACCTGTGCT
ATAAGATGTCCATTGTAAAGGATATTTTTATAGCCTTGGGTGCCTAGCTT
CTTGTTTCTCACCAGTCTCCTCTTCTGAGCTGTCTCTGGACAATAGTTGT
GTTTCTTGGTACATGCTCAAGAGAAGTCTTGAGTCCTCAGTCTACAAGGG
TTGCTTATTGGCTATGACTTAACCTCACTTAAAAGCAGAATATTTTACCT
CACATGTTCAATCCTACCTTCTGGTCCGAAGCTATGACTACTCCCTGCAG
AGACCAATTCCCTCAGTATTCCCACTGCAGGTATTTCTAATATGTTCCTA
TAGCAGATGTCCATACCTGCTGGAGAGCCTCTGTCTCTAGGAGAGTATGG
GCTTGGGACTTCTTGATCATAAGGAGATCAGAGACAGTAATTGGGACATG
GAAGGTAGCATAACCACAAGTAGTGAAGAGCCCTGTGGGCAGGTTTGGTG
CAGTACN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACGAAAAATTCGCTACTTAGAGCAGGCTGGCATTGAA
TTAATAAGTGACCTTCTTACCTCTGTCTCCCAAGGACTGGAATCACCATC
CTTGTCTGAAACACAGTATCTCTGGAGTAGACACTAAAATAACAAGAGAA
GTCATAGGGTCTGGAGTGCAATTATTCAGTGCCTGCTGTGTGCCTTGCAT
AATTTATGCACCTCATGAGTATGGTCTGAGTCATGTTGGTGATGTGTTTT
TATTTTACAAGTAAGAAANCATGNCTTGTAAGGAAATGGCCAAAAGGTTC
ATCTTAAACCTGTAATCTCAGCACTAGACAGATGGAAGCAGGGGAATCGG
GAGTTCAGGGCCAGCCTCAGCTACATAGTGAGTTCAGGGCTATCCTAGCT
ATATGATACCCTGTCTGTAACAGCAAATCAGACAAAGGGTATGCGTTTTA
CTACACTCTTAAAAACTCATTTCTACCTTTTCACAGGCCCCTCTATTTCC
TGGATTCTACATATACTTGTGCCCACACAAATGTTTATGCTTAAACCCAT
TGCCATGTATCCTAATCTTTTTCTCAGTTTGAAACATGGTTTTTCTATGT
CACCCTGGATGACATGAAACTCACTATATATATCAGACTGAACTCACAGA
AATCTGCTCACCTCTACCTTTGGAGTACTGAGATTAAAGGTGTGTGCCAG
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_d13.g1 MSMg01no498_d13.g1 CHROMAT_FILE:
MSMg01no498_d13.g1 PHD_FILE: MSMg01no498_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:10 2005
         (422 letters)



>mm_chr12_105760573_105761394
          Length = 822

 Score =  793 bits (410), Expect = 0.0
 Identities = 419/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaggaaatggccaaaaggttcatcttaaacctgtaatctcagcactagacagatggaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 639 gtaaggaaatggccaaaaggttcatctcaaacctgtaatctcagcactagacagatggaa 580

                                                                       
Query: 61  gcaggggaatcgggagttcagggccagcctcagctacatagtgagttcagggctatccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcaggggaatcgggagttcagggccagcctcagctacatagtgagttcagggctatccta 520

                                                                       
Query: 121 gctatatgataccctgtctgtaacagcaaatcagacaaagggtatgcgttttactacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gctatatgataccctgtctgtaacagcaaatcagacaaagggtatgcgttttactacact 460

                                                                       
Query: 181 cttaaaaactcatttctaccttttcacaggcccctctatttcctggattctacatatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cttaaaaactcatttctaccttttcacaggcccctctatttcctggattctacatatact 400

                                                                       
Query: 241 tgtgcccacacaaatgtttatgcttaaacccattgccatgtatcctaatctttttctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtgcccacacaaatgtttatgcttaaacccattgccatgtatcctaatctttttctcag 340

                                                                       
Query: 301 tttgaaacatggtttttctatgtcaccctggatgacatgaaactcactatatatatcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttgaaacatggtttttctatgtcaccctggatgacatgaaactcactatatatatcaga 280

                                                                       
Query: 361 ctgaactcacagaaatctgctcacctctacctttggagtactgagattaaaggtgtgtgc 420
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctgaactcacagaaatatgcccacctctacctttggagtactgagattaaaggtgtgtgc 220

             
Query: 421 ca 422
           ||
Sbjct: 219 ca 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)