Query= MSMg01no498_i23.b1 MSMg01no498_i23.b1 CHROMAT_FILE:
MSMg01no498_i23.b1 PHD_FILE: MSMg01no498_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:39 2005
(598 letters)
>mm_chr12_51177498_51178495
Length = 998
Score = 1129 bits (584), Expect = 0.0
Identities = 591/594 (99%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcctatctgataataacagtttggcctgccagccaggtagggtctccattcca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggaattctcctatctgataataacagtttggcctgccagccaggtagggtctccattcca 842
Query: 64 gaaggaggagagtccagaagacaggaaattcagctgaataaacactctttgggtttgcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaaggaggagagtccagaagacaggaaattcagctgaataaacactctttgggtttgcaa 782
Query: 124 actatttgagtctagggtatcattctctggtgattcttggatcatgttacaccaagacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 actatttgagtctagggtatcattctctggtgattcttggatcatgttacaccaagacag 722
Query: 184 aattcattattttgatcatttttatatataaaaatattaaaatataattttggtataaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aattcattattttgatcatttttatatataaaaatattaaaatataattttggtataaaa 662
Query: 244 ataatatttcacaaaatatcagttaagcatacttattttatgatttaaaaattctccttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ataatatttcacaaaatatcagttaagcatacttattttatgatttaaaaattctccttt 602
Query: 304 acaacatgcaacattttatatgtaaaataccatgtgtagagtgcataattaactcattta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acaacatgcaacattttatatgtaaaataccatgtgtagagtgcataattaactcattta 542
Query: 364 atattttctattgttgaacaattgattttcatctagcctgttctatataacattatagac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atattttctattgttgaacaattgattttcatctagcctgttctatataacattatagac 482
Query: 424 atgtaatgttttttactttgttttgatttttccttccttcctctcttcctcccgagaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtaatgttttttactttgttttgatttttccttccttcctctcttcctcccgagaccc 422
Query: 484 tccttctctctctctctccctcccttccttccttcctcccttctttctgtcttcctcctt 543
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcct--tctctctctctccctcccttccttccttcctcccttctttctgtcttcctcctt 364
Query: 544 tcacttgttccttcctttctccattcctccctccctcctccctcttccctcctt 597
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcacttgttccttccttcctccattcctccctccctcctccctcttccctcctt 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_i23.g1 MSMg01no498_i23.g1 CHROMAT_FILE:
MSMg01no498_i23.g1 PHD_FILE: MSMg01no498_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:39 2005
(250 letters)
>mm_chr12_51012205_51012854
Length = 650
Score = 468 bits (242), Expect = e-136
Identities = 248/250 (99%)
Strand = Plus / Plus
Query: 1 cttgtgcttgttatttctcttaatgttatgaaacaattgttgttgagattaagatgttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtgcttgttatttctcttaatgttatgaaacaattgttgttgagattaagatgttaa 260
Query: 61 aatcttcttgatggcatagagttttcctatctgtgtctttttgttgttgttgttgtttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcttcttgatggcatagagttttcctatctgtgtctttttgttgttgttgttgtttgg 320
Query: 121 ttggtttttgggttttgttttgtttttttgagacagggtttctctgtgtagccctggctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttggtttttgggttttgttttgtttttttgagacagggtttctctgtgtagccctgtctg 380
Query: 181 tcctgtaactcactttgtagaccaggctggcctcgaactcagaagtccacctgcctctgc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctggaactcactttgtagaccaggctggcctcgaactcagaagtccacctgcctctgc 440
Query: 241 ctcccaagtg 250
||||||||||
Sbjct: 441 ctcccaagtg 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
