BAC Information

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BAC

Clone NameMSMg01-499H07
Chromosome12 (Build37)
Map Location 95,899,800 - 95,900,112
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499H07.T7 (MSMg01no499_h07.b1)MSMg01-499H07.TJ (MSMg01no499_h07.g1)
ACCAG575533AG575534
length672691
length of high quality
(start - end)
324 (307 - 630)314 (316 - 629)
definitionCHROMAT_FILE: MSMg01no499_h07.b1 PHD_FILE: MSMg01no499_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:50 2005CHROMAT_FILE: MSMg01no499_h07.g1 PHD_FILE: MSMg01no499_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTACTAAAGTCAGAAAATGGCNGGAATCTCTGTTCCTGCAAAAAAGAG
TGTGGTGTGGTATGAGATCTTCTATGGTTGCTATAGAGGATAACCAAGCG
CACTGGTAATTGACTAAACCGTTTTGAAGAACTCTGGTGTCTCCTTGACA
AAAAAACGTATTAAGGGGCATTTCATGCCTTATAATGTAATTTTCATTGT
GTAATCCCTGTCTTTTCAAATTGTCATGTTCTCATGTATAAAAGATGATT
TTGTTCTAACACTCCTTTTAAAGTATTATTTTAGAATTTGCTAGTGTGGG
TAACCTGAGACTGCGGTACATAGGGAAGCAGGCTACCCGGTCCTGATCTG
GGGCACAAGCCCCTTCCGCTCCACTCGAGCCCCGGGCTACCTTGCCAGCA
GAGTTTCGCCCAACACCTGCAAGGGCCCACACAGGAATCCCCACGGGATC
CTAAGACCTCTGGTGAGTGGAACACAGTGCCGGCCCCAATCCAATCGCGG
GGAACCTGACACTGCGTATGATATTTCTATCCTTTGATTTTTCAGTCTTT
ATTATTCCTACTGTAGCATTAGCTTTCTTCACTCTTTAACATGTTTATAT
ATGCATGTATTTAGTATTCATCTTCATGAATTTCATATACTAAAGAGAAT
ATTATTTTAACAAGTATTATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CTGAAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAA
GATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTATGGCGGTTCC
TCAGATTTTTTGGTCATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_h07.b1 MSMg01no499_h07.b1 CHROMAT_FILE:
MSMg01no499_h07.b1 PHD_FILE: MSMg01no499_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:50 2005
         (324 letters)



>mm_chr12_95899390_95900113
          Length = 724

 Score =  466 bits (241), Expect = e-136
 Identities = 296/315 (93%), Gaps = 2/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gtacatagggaagcaggctacccggtcctgatctggggcacaagccccttccgctccact 69
           ||||||||||||||||||||||||| ||||| | ||| || ||||||| || ||||||||
Sbjct: 723 gtacatagggaagcaggctacccgggcctgacccgggacaaaagccccctctgctccact 664

                                                                       
Query: 70  cgagccccgggctaccttgccagcagagtttcgcccaacacctgcaagggcccacacagg 129
           ||||||||||||| ||| |||||| |||||  |||  ||||| |||||||||||||||||
Sbjct: 663 cgagccccgggcttcctggccagcggagtt--gcctgacacccgcaagggcccacacagg 606

                                                                       
Query: 130 aatccccacgggatcctaagacctctggtgagtggaacacagtgccggccccaatccaat 189
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 605 attccccacgggatcctaagacctctggtgagtggaacacagcgccggccccaatccaat 546

                                                                       
Query: 190 cgcggggaacctgacactgcgtatgatatttctatcctttgatttttcagtctttattat 249
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtggggaacctgagactgcgtatgatatttctatcctttgatttttcagtctttattat 486

                                                                       
Query: 250 tcctactgtagcattagctttcttcactctttaacatgtttatatatgcatgtatttagt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcctactgtagcattagctttcttcactctttaacatgtttatatatgcatgtatttagt 426

                          
Query: 310 attcatcttcatgaa 324
           |||||||||||||||
Sbjct: 425 attcatcttcatgaa 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)