BAC Information

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BAC

Clone NameMSMg01-499L20
Chromosome12 (Build37)
Map Location 39,626,312 - 39,626,650
singlet/doubletsinglet
Overlap geneLOC100043145
Upstream geneDgkb, LOC668824, LOC100043142, Etv1
Downstream geneLOC100043148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499L20.T7 (MSMg01no499_l20.b1)MSMg01-499L20.TJ (MSMg01no499_l20.g1)
ACCAG575750AG575751
length727761
length of high quality
(start - end)		636 (63 - 698)643 (67 - 709)
definitionCHROMAT_FILE: MSMg01no499_l20.b1 PHD_FILE: MSMg01no499_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:12 2005CHROMAT_FILE: MSMg01no499_l20.g1 PHD_FILE: MSMg01no499_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATCCGCGGAATTCCTCATT
CTCTACTTCATAGATTCTTCCCAGCGATGAGGCATCCAATGTGATTTGAA
CATTCGATGGTCAGCATTTCGATCTAGTATGAGTGTCTGCATTCATCACC
AATTAAAAACAACAACAAAAAAACAACAATAGTAAACTTTTCCATAGAAA
ACCATTTTGTTTATTTTCCCTTGAAGGTACCAGTTGCAAACAGCTTCTTA
TTTAAGACTGGAATCTCATGTTCATTTTTTCCTCTCAGAGCTGAGACCCA
AGCTGACTTGAACTTGTAGAGGCTCTATGTATGCTGTCAAAGTTCCACAT
GGGCATCAATCCTCTTGTTTCTAGAAGATGCCATTTTTTTGGAGTCATCC
ACCGCTACCCTAGCTCTTACAATCTTTCCTCCTCCTTTTCCACATAGATT
CCTGAGCCTGAAGGGGAAGGATTTGAAGAAGACAGCCCACTTAACACTCC
TTACTCCACACAAGAGTAGTTAGTTGGTCAACACAAAACAAAAACAAGAT
TGTTTGTAGACTTTTTGTTTTTGTTTTGTTTTAGGTGGTCTTTTTGGCTC
AAAGTTTTTTGTTTGTTTTTACCTTTGCCTTTTGTTCAGGGGACTTAAAC
TAGTCAGGGGGAAAAACCAAAACCAAAACACCTCCATTAGGCCAGGTGTT
GGTGGTATATACTTTTAATCCCTGCAT

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAGTAAAGGTCCCATAAAATATTTTTAACAAAA
TCATAGAAGAAAATTTTCCTAACCTAAAGGCAATGTCTGAAAAGATACAA
GACGCTTACAGAACACCAAATAGATTAGATCAGAAAAGAAAGTCCCTATT
CAACATAATAATCAAAACACTAGACGTACAGAACAAAGAAAGAATATTAA
AAGGTGCAAAGTAAAATGTTGAATAATATATATAAACAGACCTATTAGAG
TGATACCCAACTTCTCAATGGAAACTCTAAAAGCCAGAAGGGCCTGGACA
CATGTTCTGCCGACTCAAATAGATCACAGATGCCATCACAAACTGCTTTA
CCCAGTAAAACATTTAATTACCATAGAGGGAGAAAATAACACACTTCATG
ATAAAGTTTGGTTTAAATAATATTTATGCACAAATTCAGTCTTACATAAG
AAACTAAAAGAAAAATTCCAACTGAAGGAGTTCAACATACATGCAAAAAA
AAATACAGGAAATAAGTAAGTGCAAAACAACAAAAACAAAAGAAAGGAAA
CACACAGAGACTATTATCAACAACCACATAAAACTAATAGGAATAAATGA
TCACTGATCATTAATAATCTATTAATATCAATGAACTCAGTTCTCCAACA
AAACGACCAAGGCAGTCCAGGAAATGGTAAGCCTAGGAAAGAGAACCAGA
ACTATAGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_l20.b1 MSMg01no499_l20.b1 CHROMAT_FILE:
MSMg01no499_l20.b1 PHD_FILE: MSMg01no499_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:12 2005
         (636 letters)



>mm_chr12_39626303_39627335
          Length = 1033

 Score =  435 bits (225), Expect = e-126
 Identities = 315/347 (90%), Gaps = 14/347 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattcttcccagcgatgaggcatccaa-tgtga-tttgaaca-ttcgatggtcagcattt 57
           ||||||||||||||||||||||||||| | |||  ||||||| || ||| ||||||||||
Sbjct: 348 gattcttcccagcgatgaggcatccaagt-tgaggttgaacactt-gatagtcagcattt 291

                                                                       
Query: 58  cgatctagtatgagtgtctgcattcatcaccaattaaaaacaacaacaaaaaaacaacaa 117
           |||| |||| ||||| |||||||||||||||||| ||||||||    ||| |||||||||
Sbjct: 290 cgatgtagtgtgagtttctgcattcatcaccaatgaaaaacaa----aaacaaacaacaa 235

                                                                       
Query: 118 tagtaaacttttccatagaaaaccattttgtttattttcccttgaaggtaccagttgcaa 177
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 234 tagtaaacttttccatagaaaactgttttgtttattttcccttgaaggtaccagttgcaa 175

                                                                       
Query: 178 acagcttcttatttaagactggaatctcatgttcatttttt-cctctcagagctgagacc 236
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 174 acagcttcttatttaagactggaatttcatgttcatttttttcctctcagagctgagacc 115

                                                                       
Query: 237 caagctgacttgaact-tgtagaggctctatgtatgctgtcaaagttccacatgggcatc 295
           |||||||||||||| | ||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 114 caagctgacttgaa-tatgtagaggctctacgtatgctgccaaagtttcacatgggcatc 56

                                                          
Query: 296 aatcctcttgtttctagaaga-tgccatttttttggagtcatccacc 341
           | |||| ||||||||| || | |||||||| || |||||||||||||
Sbjct: 55  agtccttttgtttctaaaa-actgccatttcttgggagtcatccacc 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1033
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1023
Effective search space:   640398
Effective search space used:   640398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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