BAC Information

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BAC

Clone NameMSMg01-499O19
Chromosome12 (Build37)
Map Location 45,105,390 - 45,105,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507
Downstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499O19.T7 (MSMg01no499_o19.b1)MSMg01-499O19.TJ (MSMg01no499_o19.g1)
ACCAG575890AG575891
length7331,487
length of high quality
(start - end)		533 (39 - 571)---
definitionCHROMAT_FILE: MSMg01no499_o19.b1 PHD_FILE: MSMg01no499_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:27 2005CHROMAT_FILE: MSMg01no499_o19.g1 PHD_FILE: MSMg01no499_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGAATTCAAGCA
TATTTTCTGATAGATAAGTGCAGCTATTTCTACATATTTCGTTCAGTCAC
ATGTACATTTTCTCATATTTCTATGTTATAGATAGAATTGTCTAACATGG
CTCAAATCACAAACTACTTTTTAAAAATGAGATTTTTTTTTCCCATAAAA
GACAGGCTATAGAAATAGACATTAAGTCAAAAGCTAAATGGACTTAACCA
AGACTGTCCATTATAAATCCAGAGAACTGAATCCTCAGGAAAAGAGAAGA
AACCTCTTTATTAAGGTTTCTTATTTGATGAAATTTGCTTTCTCTATGAA
AACAGAATTGTTAATCACAGACCGTTACAACCACTCCCAAGCCTCTTCCT
TGCTCTTTTGCACTCAAAGTTCACAGTTCACTGAACAATTTAACCTGTTC
TAAAAGAATGTCTAATTTCTTCCTCTCGATAGATAGATGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAA
TAGATNAGATAGATAGGTTATTANANTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTNNNNNNNNNNNNNNTTNTNTNNTTNTTTTTNTTTNNTTTTTTT
TTTTTTTTTTTTTTTTTTNNNNNNTTNNNTTTTTTTTTTTTNTNTNTTTT
NTTNTTTTTTTTTNTTTTTTNTTTTTTTTTTTN

GCAGGGGNGTCGTGCAATCCTTAAANTTGTGTAATAGCACCTAGAGCTAC
GGACGTTGGATCACAGGAGATTTCCTTCCCCTACAGATGGAGGAGGGCGA
TATGAGTTANGTGCGNAGGCGGATCTTCCCTCTGCGTGAGTAAGACCATA
CCCTCGCGAGTCTCTCATATCATTTGTCCCCTTGTGCTGGTGCGTAGGAT
GTGTGCTTGGTGTGTGTGGGTCGTCGCTCTCGCGCACGTCCTCCACTACA
CGCATTAGGGCTATACGCCAGTGCACGAGCGCGCATGACTCATCCAGTAC
ACGCGTACGACCTCCTCCCACTCGTATAACAACATTACTTGCGGATCCCC
TCAGACATTGTGATGCACGAGCCCCGCTACCGTGAGATCCATACCCAATC
ATTTATATGTTGGTGTGATAGGCGCCTGTGCACTGCTGGAATTTTGTATA
TCGATCAGCATCTGGCTAAACATTGTCCCATTGATTGTAGATGCCTCGCT
CCGTCGTAGCGTTCTTCGCACTCACCTACGATCAGCATACACTGAGGAAG
TCCTGACGAGATCAGCTGAGCGACCTGAGAGAAGCTAATGCAGTACAGCC
TCAAGGAGTAACCCTTCCACTACCTCAACACTATATCCCCTTACGCTCTA
CNTACGATAGTGTGTATATACNCGCCAGCAGTATGATCTCGTATCACTAT
GTATCAAACGCGCAGAATAACGTACGCTTATCATTTACACAAATCCTACA
TTTACACTACTATAATCATCCATCTCTCTGTTATAGTCATAACACCCTAT
GCCTAAGACTCTAAGTACATACGTGCTAGAATAGTACCGTGCGCGAGATG
CGCCACGCCAGACCCATGTGACGCGAGNTGTGTAGTTGATTTGTGAGCCA
TACGCGATCGGCGCTCGCGTCGCGCTGATGTCTACGAATTGGCTGTGCAG
CAATTGGATAGCACGGTCGAGCTAGTATCGGTGTATATTAGTGACGACGC
CGCTGTGCGAATATCATGACATGCGAGATGCGGATAGATAACGAGAACAG
GCGAGTCGTCGATCCACGCTATACACCGACGATTAGTAGGAGTGACANTA
TGATTTAACCGTGTCTATACTACACAGACAACTATCATAGTGCTGATACA
CGTAGCAGCAACGAACTGTCTTAGCACGCTCGCGCGATATGCAGATATCA
TNTCGTTATTGCAGCTGCATCGTGACTTATCTGACGCACCACTCACCAGT
GTCGCGTTGCTACGCTATGTGCGCGCCTCCACCTCAGCATGCGCGGTACG
GGNGTAGGTATACATATAGTACCCTCGCGTAATTATCTCATGTGCATGTA
GAGACACTCACAGACGCGCGTCGAGTGAGCGAGAGAACTCCACCTTGACA
CCATTCAACCGTGGTATGGTATGATACCGCGATACGACGATACCTGAGCG
CGGTTATACAATGCCTCAGTCAGTGCNGTCCTNGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_o19.b1 MSMg01no499_o19.b1 CHROMAT_FILE:
MSMg01no499_o19.b1 PHD_FILE: MSMg01no499_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:27 2005
         (533 letters)



>mm_chr12_45105189_45106121
          Length = 933

 Score =  791 bits (409), Expect = 0.0
 Identities = 457/473 (96%), Gaps = 2/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcaagcatattttctgatagataagtgcagctatttctacatatttcgttcagtca 61
           ||||||||||||| | | || | |||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaagcatactatatgtttgataagtgcagctatttctacatatttcgttcagtca 261

                                                                       
Query: 62  catgtacattttctcatatttctatgttatagatagaattgtctaacatggctcaaatca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catgtacattttctcatatttctatgttatagatagaattgtctaacatggctcaaatca 321

                                                                       
Query: 122 caaactactttttaaaaatgagatttttttttcccataaaagacaggctatagaaataga 181
           ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| ||
Sbjct: 322 caaactacttttttaaaatgagatttttttc-cccataaaagacaggctatagaaatcga 380

                                                                       
Query: 182 cattaagtcaaaagctaaatggacttaaccaagactgtccattataaatccagagaactg 241
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cattaagtcaaaagctaaatggacttaaccaagactgtccattagaaatccagagaactg 440

                                                                       
Query: 242 aatcctc-aggaaaagagaagaaacctctttattaaggtttcttatttgatgaaatttgc 300
           ||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 441 aatcctccaggaaaagagaagaaacctctttattaagggcacttatttgatgaaatttgc 500

                                                                       
Query: 301 tttctctatgaaaacagaattgttaatcacagaccgttacaaccactcccaagcctcttc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tttctctatgaaaacagaattgttaatcacagactgttacaaccactcccaagcctcttc 560

                                                                       
Query: 361 cttgctcttttgcactcaaagttcacagttcactgaacaatttaacctgttctaaaagaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cttgctcttttgcactcaaagttcacagttcactgaacaatttaacctgttctataagaa 620

                                                                
Query: 421 tgtctaatttcttcctctcgatagatagatgatagatagatagatagatagat 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctaatttcttcctctcgatagatagatgatagatagatagatagatagat 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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