BAC Information

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BAC

Clone NameMSMg01-500N22
Chromosome12 (Build37)
Map Location 13,560,939 - 13,561,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243
Downstream geneLOC100042396, LOC238091, EG633789, LOC668481, AW125753, LOC100043256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500N22.T7 (MSMg01no500_n22.b1)MSMg01-500N22.TJ (MSMg01no500_n22.g1)
ACCAG576604AG576605
length681679
length of high quality
(start - end)		575 (21 - 595)510 (57 - 566)
definitionCHROMAT_FILE: MSMg01no500_n22.b1 PHD_FILE: MSMg01no500_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:35 2005CHROMAT_FILE: MSMg01no500_n22.g1 PHD_FILE: MSMg01no500_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATAGTTCGAGGATCCGCGGAATTCCTCTGTGATTTACGGAGG
CCATGAAGTGGTGACTTGGGCCTAGAAAGTAAGAACTTTTACTCCACTAC
ACACTGGCTGAGAGACTACTCAGAGTTGAGCCTCTATACCCAAGAGTTTG
TCAGAAGGAAGGCATAATAGCTCCCTTGAAATAGAACTCTGGTTGTAATT
TTTTTGGCACCACCTTCCTATGTATTAAGAATTGAATCGATTGAAGATTT
TCAACTCAAAGGGCCAGTAAATATCTTCAACAAAATTATAGAAGAAAACT
TCCCAAACCTAAAGAATGACATGCCCATGAACATACAAGACGCCTACAGA
AGTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCAACACATAATAAT
CAGAACAACAAATGCACTAAATAAAGAGAGAATATTAAAAGAAGTAAGGG
AAAAAGGTCAAGTAATATATAAAGGCAAGCCTATCAGAATTACACCAGAT
TTTTCACCTGAGACTATGAAAGTCAGAAGAGCCTAGAAAGATGTTATACA
GACACTAAGAGAACAAAAATGCCAACCCAAGCTACTATACCCAGACNAAC
TTTNCATTACCTTAGATGGAGNAAACAAAGTATTCCANCACAGAACCAAA
TTCATACATTATCTTTCTACGAATCCCGNCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTAGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTT
GGGAAGTTTTCTTATATAATTTTGTTGAAGATATTTGCTGGCCCTTTAAG
TTGAAAATCTTCATTCTCATCTACTCCTATTATCCGTAGGTTTCGTCTTC
TCATTGTGTCCTGGATTTCCTGGATATTTGACTTAGGATCTTTTTACATT
TTGCATTTTCTTTGGTTGTTGTGCCCATGTTCTCTATGTAATCTTCTGTA
TCTGAGATTCTCTCTTCCACCTCTTGTATTCTGTTGCTGATGCTCACATC
TTGGTTCCTGATTTCTTTCCTAGGGTTTCTATCTCCATAGTTGTCTTCCT
TTGGGTTTTCTTTATTGTTTCTACTTCCCTTTTTAGGTCTTGGATGGTTT
TGTTCAATTCCATCACCTGTTTGGCTGTGTTTTCCTGTAATTCTTTAAGG
GATTTTTGTGTTTCCTCTTTAAGGACTTCTCCCTGTTTAGCAGTGTTCTC
CTGTATTTCTTTAAGTGAGTTATTAATGCCCTTCTTAAGGTCCTCTATCA
GCATCACCAGATATGATTTTTAATCTGAATCTTGCTTTTCGGGTGTGTTG
GGGTATCCTGGACTGGCTCANGGGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_n22.b1 MSMg01no500_n22.b1 CHROMAT_FILE:
MSMg01no500_n22.b1 PHD_FILE: MSMg01no500_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:35 2005
         (575 letters)



>mm_chr12_13560939_13561913
          Length = 975

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcctctgtgatttacggaggccatgaagtggtgacttgggcctagaaagtaagaa 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaattcctctgtgaattacggaggccatgaagtggtgacttgggcctagaaagtaagaa 337

                                                                       
Query: 66  cttttactccactacacactggctgagagactactcagagttgagcctctatacccaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cttttactccactacacactggctgagagactactcagagttgagcctctatacccaaga 277

                                                                       
Query: 126 gtttgtcagaaggaaggcataatagctcccttgaaatagaactctggttgtaattttttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtttgtcagaaggaaggcataatagctcccttgaaatagaactctggttgtaattttttt 217

                                                                       
Query: 186 ggcaccaccttcctatgtattaagaattgaatcgattgaagattttcaactcaaagggcc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggcaccaccttcctatgtattaagaattgaatcgattgaagattttcaactcaaagggcc 157

                                                                       
Query: 246 agtaaatatcttcaacaaaattatagaagaaaacttcccaaacctaaagaatgacatgcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 agtaaatatcttcaacaaaattatagaagaaaacttcccaaacctaaagaatgacatgcc 97

                                                                       
Query: 306 catgaacatacaagacgcctacagaagtccaaatagactggaccagaaaagaaattcctc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  catgaacatacaagacgcctacagaagtccaaatagactggaccagaaaagaaattcctc 37

                                               
Query: 366 ccaacacataataatcagaacaacaaatgcactaaa 401
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  ccaacacataataatcagaacaacaaatgcactaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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