TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGGCGG
AATTCACCACCCAATCACCCTTTATGTAGGCTACTCTCAGCATCCTTCGA
TAAGGTCATATGTATATATGAATCCCAGTGCTTGGGCAGGCCTTTTGTAG
CCATGAGAAGATGTGTCTAAAGTCCAAGACCAAGCAGATCTGCAGAAAAC
CCAGGTTTCTTCTAAACATCCCTGGGACTGCTTCCCTCAAGTTGGTTATG
TGAGCTCAGACATTTTATTCATGAAAAAAAAGTACATTTTAATTTATTTT
GTGTTCATGTGTGGGGGTTCCCGCATGTTTAGGTTAGAGGACAACTTTCA
GGAGTCAGTTCTCCCCCTCTACCATGTAGGTCTTGGGTTTGAACTCAGGC
CCTCAAGCTTTGCTGCAATTGCTTTTACCCAGTGAGCCGTCTTGTGGTCC
CTTGTTTACTTCTTATTGGGGTGGTTTGCTGCTTGTACCAGAAGCACACG
AGCCAGAGACTTTCTATGTATCAGAAATGGAGACAAAATGGGAGGAATAT
GGCTTTCAGGATGTGGTTTATCTCTATTGAAAAGCATTTTCACATACCAC
ATAAAGCCATCCACTAGGCCACCCTAGATCTGCAGACATAAGCATCCTAC
AGCCTAAGAAACTGTAAATTTATTGTCCCTGTCTGCAGATGGTCACAACA
CTAAGACATTAAATTGATACTAGTCCCAACCTCTTCAATCCCACTG

NNNCCCCGGGGCCCCGAANNNNNNTTCCGCAGGGAANNAACGAAGAAGCG
GGTAGGCCGGGNGGCCGCCGGGCTTTCACATCAGGNGACCNANAGAAGGA
TTCCCGAAAAAGAGAGCCANAGAGCACNNCNCNNCANACNCAAAAACAAG
GAACAGCGCCCNANCGNNGGGGNNNCNCGGGGCAGGGAACAAGAAAAGCC
CCCAACCAAAACCAAAAAACGGAGAAAAAAGGGGCCCCGGGGACCCCCGG
CCCCAAAAAAAAAACAAGCCAACCCCCCACCCCCCCCCAAAAGGGGGACC
CCCCAAAAACCCCCGCCCCAAACCCCGGGGCCCCCCAAAAAAAAAGGGGC
CAAAAAGGGGCCCAAGGGAAAAAAGGGGGCCCCCTCTTTTTTTTGGGGGG
GGCGCCCCCCCGCAAAGAAAGAAGGGGCCCCCACAAAAAAAAGAGGGGGG
GGGCGGCCCCAAAAAAAAAAAGCGGGCGCGAAAAAAAAAACCGGNCTAAT
AAANAAACCTTTTGTTTATTAGTGGGGAGAAAGAGGGGGGGGNGCNTTGT
GTAAAAGAAAAAAAAAAAATAGTCATAACCTCCCCAAAAAGAAGAAGAGG
AAAAGAGGGCGAGCGACGGGGCGCGCGGTGTGAAGAGTACCCATTTA

Query= MSMg01no501_k03.b1 MSMg01no501_k03.b1 CHROMAT_FILE:
MSMg01no501_k03.b1 PHD_FILE: MSMg01no501_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:29 2005
         (545 letters)



>mm_chr12_8836638_8837582
          Length = 945

 Score = 1015 bits (525), Expect = 0.0
 Identities = 541/547 (98%), Gaps = 2/547 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatgtaggctactctcagcatccttcgataaggtcatatgtatatatgaatcccagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttatgtaggctactctcagcatccttcgataaggtcatatgtatatatgaatcccagtg 258

                                                                       
Query: 61  cttgggcaggccttttgtagccatgagaagatgtgtctaaagtccaagaccaagcagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttgggcaggccttttgtagccatgagaagatgtgtctaaagtccaagaccaagcagatc 318

                                                                       
Query: 121 tgcagaaaacccaggtttcttctaaacatccctgggactgcttccctcaagttggttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgcagaaaacccaggtttcttctaaacatccctgggactgcttccctcaagttggttatg 378

                                                                       
Query: 181 tgagctcagacattttattcatgaaaaaaaa--gtacattttaatttattttgtgttcat 238
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 379 tgagctcagacattttattcatgaaaaaaaaaagtacattttaatttattttgtgttcat 438

                                                                       
Query: 239 gtgtgggggttcccgcatgtttaggttagaggacaactttcaggagtcagttctccccct 298
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgtgggggttcccgcatgtagaggttagaggacaactttcaggagtcagttctccccct 498

                                                                       
Query: 299 ctaccatgtaggtcttgggtttgaactcaggccctcaagctttgctgcaattgcttttac 358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttaccatgtaggtcttgggtttgaactcaggccctcaagctttgctgcaattgcttttac 558

                                                                       
Query: 359 ccagtgagccgtcttgtggtcccttgtttacttcttattggggtggtttgctgcttgtac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccagtgagccgtcttgtggtcccttgtttacttcttattggggtggtttgctgcttgtac 618

                                                                       
Query: 419 cagaagcacacgagccagagactttctatgtatcagaaatggagacaaaatgggaggaat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagaagcacacgagccagagactttctatgtatcagaaatggagacaaaatgggaggaat 678

                                                                       
Query: 479 atggctttcaggatgtggtttatctctattgaaaagcattttcacataccacataaagcc 538
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atggctttcaggatatggtttatctctattgaaaagcattttcacataccacataaagcc 738

                  
Query: 539 atccact 545
           |||||||
Sbjct: 739 atccact 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)