Query= MSMg01no501_k10.b1 MSMg01no501_k10.b1 CHROMAT_FILE:
MSMg01no501_k10.b1 PHD_FILE: MSMg01no501_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:31 2005
(611 letters)
>mm_chr12_21390619_21391629
Length = 1011
Score = 861 bits (445), Expect = 0.0
Identities = 457/465 (98%), Gaps = 8/465 (1%)
Strand = Plus / Minus
Query: 5 gaattcaggtccttttc----gcttgctgtttccaccgtcaccagaacaaatgttactgc 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaattcaggtcc----ccctggcttgctgtttccaccgtcaccagaacaaatgttactgc 406
Query: 61 aattagacaatcaaaacctgcaaggtttgaggcactgggctttggtgattgagggctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aattagacaatcaaaacctgcaaggtttgaggcactgggctttggtgattgagggctaat 346
Query: 121 aaatttagtgtagatatttgctttgttcttactgggattaaaatttttttttctttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatttagtgtagatatttgctttgttcttactgggattaaaatttttttttctttttct 286
Query: 181 tgtgttaggatttaagcttggactcatatattctaaataaatattctaataaagccatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtgttaggatttaagcttggactcatatattctaaataaatattctaataaagccatat 226
Query: 241 caccagacctagatgttaggatgtttttgtttgaaacatggtctatgcagcacaaactgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 caccagacctagatgttaggatgtttttgtttgaaacatggtctatgcagcacaaactgc 166
Query: 301 cctcaaaattttgatcctcctatgtgctgggatcataagagtataacatcaccatgcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cctcaaaattttgatcctcctatgtgctgggatcataagagtataacatcaccatgcctg 106
Query: 361 gtagttgatttagtgtgacagaaatctgttaccatatttttaaaacatgtgcattattgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtagttgatttagtgtgacagaaatctgttaccatatttttaaaacatgtgcattattgg 46
Query: 421 aactggagcgataaaccaatgaatatgagcatttgctgcttttaa 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 aactggagcgataaaccaatgaatatgagcatttgctgcttttaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k10.g1 MSMg01no501_k10.g1 CHROMAT_FILE:
MSMg01no501_k10.g1 PHD_FILE: MSMg01no501_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:31 2005
(306 letters)
>mm_chr12_21238740_21239445
Length = 706
Score = 592 bits (306), Expect = e-173
Identities = 306/306 (100%)
Strand = Plus / Plus
Query: 1 atctccataaattcagatcaacagtatatatggttctttttctcattcacctcgaaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctccataaattcagatcaacagtatatatggttctttttctcattcacctcgaaggtt 260
Query: 61 ttgataaggcttattggtgagaagtgatggtttttgctcacatgttgctgcagctggcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgataaggcttattggtgagaagtgatggtttttgctcacatgttgctgcagctggcgc 320
Query: 121 tgctgcacattcatcttgtacccatttgctgtttcgtgtctttggtcctctgccctcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgcacattcatcttgtacccatttgctgtttcgtgtctttggtcctctgccctcaag 380
Query: 181 tcaggactgtgttcattctgtcaagttatgcaagctcgttataatagtctggattctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggactgtgttcattctgtcaagttatgcaagctcgttataatagtctggattctgtc 440
Query: 241 cttgagtaggtcactctcaggtgtttgtctcatcccatgggctgccccttcactctctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgagtaggtcactctcaggtgtttgtctcatcccatgggctgccccttcactctctta 500
Query: 301 tttatc 306
||||||
Sbjct: 501 tttatc 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
