Query= MSMg01no501_n24.b1 MSMg01no501_n24.b1 CHROMAT_FILE:
MSMg01no501_n24.b1 PHD_FILE: MSMg01no501_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:46 2005
(598 letters)
>mm_chr12_10360004_10361001
Length = 998
Score = 1141 bits (590), Expect = 0.0
Identities = 593/594 (99%)
Strand = Plus / Plus
Query: 5 gaattcactcatgtttcagtgaggctcatcatggaacttggccatatttacaatgttcag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcatgtgtcagtgaggctcatcatggaacttggccatatttacaatgttcag 264
Query: 65 tttagcctatagtctatgcccccactgcagaaaaagttaaaataaaataaaataataaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttagcctatagtctatgcccccactgcagaaaaagttaaaataaaataaaataataaag 324
Query: 125 caatagtaaaatgcatatagactgattccaaaaccattttttcaacaactaaatgattct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatagtaaaatgcatatagactgattccaaaaccattttttcaacaactaaatgattct 384
Query: 185 attcccagaaaagctattcacatctcacccaagccataccttcattaaaaagatggaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attcccagaaaagctattcacatctcacccaagccataccttcattaaaaagatggaagt 444
Query: 245 atgacacagaggacactaaatcttgtatctagcaaagtttgcacaatgcacacaagttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgacacagaggacactaaatcttgtatctagcaaagtttgcacaatgcacacaagttgg 504
Query: 305 tggcctacttctttagtgttgaccattcacactgtcaacctcaagttcaatgtccacact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggcctacttctttagtgttgaccattcacactgtcaacctcaagttcaatgtccacact 564
Query: 365 tctatacaataaacactgcaatgaactaagataatgttggatgcacttagaaatataact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctatacaataaacactgcaatgaactaagataatgttggatgcacttagaaatataact 624
Query: 425 ctcttcattatgttacatcatttggtctctaaatcccagtctctctgatcacaactcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcttcattatgttacatcatttggtctctaaatcccagtctctctgatcacaactcaat 684
Query: 485 ttttcctagacaagcaagcacatatttggtgggttgagttgcaataactaatgatagctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttcctagacaagcaagcacatatttggtgggttgagttgcaataactaatgatagctt 744
Query: 545 tgctgtctatttggatttgggatgcatagaaatataacaaatatgattttagaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctgtctatttggatttgggatgcatagaaatataacaaatatgattttagaa 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_n24.g1 MSMg01no501_n24.g1 CHROMAT_FILE:
MSMg01no501_n24.g1 PHD_FILE: MSMg01no501_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:47 2005
(656 letters)
>mm_chr12_10415048_10416103
Length = 1056
Score = 1181 bits (611), Expect = 0.0
Identities = 644/669 (96%), Gaps = 23/669 (3%)
Strand = Plus / Minus
Query: 1 tttttaaagcatggccccagtcaattctgagtctgaaggcaaatttaattttcccaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 tttttaaagcatggccccagtcaattctgagtctgaaggcaaatttaattttcccaatcc 972
Query: 61 actttttataccattttagttacatgtaagaattaagggccagcagtacaataaggaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 971 actttttataccattttagttacatgtaagaattaagggccagcagtactataaggaatc 912
Query: 121 aaggaagacaataatcaaggaacaagcaagacaataaacacaaagccccatgatcactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 aaggaagacaataatcaaggaacaagcaagacaataaacacaaagccccatgatcactct 852
Query: 181 ggtgatagctgtttctaaggatgatcaaggtatcggagcctacttctttgttctacccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ggtgatagctgtttctaaggatgatcaaggtatcggagcctacttctttgttctacccta 792
Query: 241 aaaccagatccttatttccttgtcctcagccaatgtcaggtccctgcctgaacttacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaaccagatccttatttccttgtcctcagccaatgtcaggtccctgcctgaacttacttc 732
Query: 301 tttgtcatgctccaatgtcagattcctgccaaacttacttctttaccatgcaatttttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttgtcatgctccaatgtcagattcctgccaaacttacttctttaccatgcaatttttaa 672
Query: 361 tatcaatagtttcatttatctgatttcaggataatggggaaaaggtaagaacactcgaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tatcaatagtttcatttatctgatttcaggataatggggaaaaggtaagaacactcgaac 612
Query: 421 tcaatatttttattatccagaaagttgtttatatttaaatattgtcaggcattttaagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcaatatttttattatccagaaagttgtttatatttaaatattgtcaggcattttaagtt 552
Query: 481 tacacacaggcacacacacacacacacacacacacacacacacacacacgcaccaacatc 540
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 551 tacacacaggcacacacacacacacacacacacacacacacac----------caacatc 502
Query: 541 ttattttacattcttattttttaatatacctctgagttttagcttcagcattctctgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ttattttacattcttattttttaatatacctctgagttttagcttcagcattctctgcgt 442
Query: 601 agtcctct-------------ggggtcttccttatgctggaagtgaatcgctgaggatta 647
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcctctattttggacacctggggtcttccttatgctggaagtgaatcgctgaggatta 382
Query: 648 ttctgattg 656
|||||||||
Sbjct: 381 ttctgattg 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
