BAC Information

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BAC

Clone NameMSMg01-502D23
Chromosome12 (Build37)
Map Location 16,004,694 - 16,005,097
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502D23.T7 (MSMg01no502_d23.b1)MSMg01-502D23.TJ (MSMg01no502_d23.g1)
ACCAG577647AG577648
length747765
length of high quality
(start - end)		584 (19 - 602)607 (59 - 665)
definitionCHROMAT_FILE: MSMg01no502_d23.b1 PHD_FILE: MSMg01no502_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:13 2005CHROMAT_FILE: MSMg01no502_d23.g1 PHD_FILE: MSMg01no502_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATAGTTCGAGGATCCGCGGAATTCTACAATGATTTACTGACCTT
CTTCTGCATTGTACATTATGCAAATGTAAGTTTCTTGGCTTTTTTCCCCT
CCCTTGTATCCATTTTTCTTAACTTTTTAAAAATTTGAATGTTTCTTTTT
ATTCCCCTCGATTGATTAGTGTATCCTGATTATGGTTTCCAGTCCCTCTA
GTCCTCCTGCTGTCCCCTCCTCCCTTTCAAATCTGGAGCCACTCCTTTCC
TGTTTCACATTAAAAAACAAGCAGGTTTCAAAAGAATAGTAATGAAATAA
AATATGGTAAAATAAAACCTAACACATTGGAGTTGGACAAGGCAAACAAA
AGGAAAAGAGCCCAAGAGAAGGCACAAGAGTCAGAGACCCACTTATTCAG
AGCAAACACTAGTTTCATAGACACTTTGATTCTCTGGAGCAACTGAGATG
GGGGGTAGATTTATCAAAGAGTTGGGTTTTTTCATTCTACAGAATACATT
TTAGCTTTAATAAACTTAAGGCTTATTTAGTTAATAATAGCTGGCTATCA
TATTAAATAACAGCCATTAAAGCCTTAAGTGAATATCTTCCTATTAATAT
TAAAGATACAATCTGTTAACAAAGTGAGCAAAGAGAAACACGATTTATTT
TTTTCTCAAAATAAAATCCTCTCCATTTGGAATCATGTCTTTCACAAGAA
ACAGCTTGGTTTCCTATCTCTTGGTCANGTGAAGTATCAAGATATCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACGTTTTCTCCCTTAACTGTGTAAGGTTGCCGATCTCATGT
AACTTAAAGGTTGAATTGAGGGTCTCATTTCTTTCCCTGGATGGTGGAGG
CCACCCTCTGTTTCTAGCCACATGGCCATAGGGTAGCCCTCATGACAATT
GGCTTTTGTAGAGTATGTTAGAACAGCTAGAGAGGATGTACCTGAAGATA
GTCACAACTTCTACTCAGAATCAGCATGCCAGGTCATTATGAGCAAGCTG
CCAGAGCCATACTTTAGCTGGATTTTTCCTACTTCATAGGTTCTTCTTTC
TTCTACCCTTCTCCATCCTTTCCAACTCCTAACACTAGATAAAAGAAAAA
AAAAAGGATAGAGAGTAGAGGAAAGAGATGCCTGAATGAAGTCAGGGATC
TGAAAGCAGACAATATTATTACCAAAGTTATTACAGTTACTTTCTGCTAG
TTATGGGCATTGAGCTCCTGGGATCAAGTTTGATCTTTGCTATCAGAATA
TCTAATTTCCTCTTCTTCTTCCTCTTCTCCTCCTCCTCCTTCCTTCCTTC
CTTCTCTTCCTTCTTCTTCTTCCTCCTCCTCCTTCTTCATCTTTTTTCTT
TGCNCAACTACTTAACAAACCACAACTAACAGCAAGTAACAACAAACAAC
CAACAACCAGCCCCACCTCTCAGAGTTCTGGGATTTATATAACCTCTGAA
AAGTCCCACGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_d23.b1 MSMg01no502_d23.b1 CHROMAT_FILE:
MSMg01no502_d23.b1 PHD_FILE: MSMg01no502_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:13 2005
         (584 letters)



>mm_chr12_16004114_16005097
          Length = 984

 Score =  735 bits (380), Expect = 0.0
 Identities = 398/404 (98%)
 Strand = Plus / Minus

                                                                       
Query: 181 tagtcctcctgctgtcccctcctccctttcaaatctggagccactcctttcctgtttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tagtcctcctgctgtcccctcctccctttcaaatctggagccactcctttcctgtttcac 925

                                                                       
Query: 241 attaaaaaacaagcaggtttcaaaagaatagtaatgaaataaaatatggtaaaataaaac 300
           ||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 924 atttaaaaacaagcaggttttgaaagaatagtaatgaaataaaatatggtaaaataaaac 865

                                                                       
Query: 301 ctaacacattggagttggacaaggcaaacaaaaggaaaagagcccaagagaaggcacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctaacacattggagttggacaaggcaaacaaaaggaaaagagcccaagagaaggcacaag 805

                                                                       
Query: 361 agtcagagacccacttattcagagcaaacactagtttcatagacactttgattctctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agtcagagacccacttattcagagcaaacactagtttcatagacactttgattctctgga 745

                                                                       
Query: 421 gcaactgagatggggggtagatttatcaaagagttgggttttttcattctacagaataca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcaactgagatggggggtagatttatcaaagagttgggttttttcattctacagaataca 685

                                                                       
Query: 481 ttttagctttaataaacttaaggcttatttagttaataatagctggctatcatattaaat 540
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 684 ttttagctttaataaacttaaggcttattaagttagtaatagctggctatcatattaaat 625

                                                       
Query: 541 aacagccattaaagccttaagtgaatatcttcctattaatatta 584
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 aacagccattaaagccttaagtgaatatattcctattaatatta 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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