BAC Information

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BAC

Clone NameMSMg01-502M10
Chromosome12 (Build37)
Map Location 80,886,195 - 80,886,784
singlet/doubletsinglet
Overlap geneRad51l1
Upstream geneMpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M10.T7 (MSMg01no502_m10.b1)MSMg01-502M10.TJ (MSMg01no502_m10.g1)
ACCAG578051AG578052
length743750
length of high quality
(start - end)
428 (64 - 491)590 (76 - 665)
definitionCHROMAT_FILE: MSMg01no502_m10.b1 PHD_FILE: MSMg01no502_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:53 2005CHROMAT_FILE: MSMg01no502_m10.g1 PHD_FILE: MSMg01no502_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTCAAG
TTACGCAGGATAGCAAATAAATTTTGTTGTTATTGAAGGTTGAAGAGCGT
TCTCTCTCTCTTCTTTCTTTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTT
CTTTTCTCTCTTTCCTTTCCTTTCTTTCTTTCTTTTCTCTCTTTCCTTTC
CTTTCTTTCTTTCTTTTCTCTCTTTCCTTTTCTTTCTTTCTTCCTTCCTT
CCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGAGACAG
AGTTTCTCTTTATAGGCCTGGCTGGCCTGAAACTCACTCTGTAGACCAGG
CTGGGCTTGAACTCAGAAATCCGCCTGGCTCTGCCTCCCAAGTGGTGGGA
TTAAAGGCGTGGACCACCACCGCCTGGCTTGAAGAGTTCTCTTGAGTAGA
GCTAACAGAGACTTTGTAGGGGACATATGATGTGCAAAGCTCTGCTTTGC
AATAACAAAGATGGTCTCTGGATGCAATGGAGAGACATGTAGGAGCTGGA
GAAAGACAACGTCAGTCCTAAGAATGAAAATCTGTGCTTGACT
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCTACAGAAATCCAGCTCAGTGCTTGACACAGACTACA
TGTCCAATAAACATTGGTTGGCTTAGATGAAATAAACTTCTCCAGAGTTG
ACAAGCTGCTATCTGTAACTTCAGAATTCCAAGTAGAGACACATTTGGAG
TACAAAACATCTCGCTTTTTAGAAGGGACAGTTGTAGCCACCGAGTCTGG
TGTAACCATTTGAAGAAACAAGTATCACTGATAGATAGAGCTGTGAACCC
CTCTGCTATACTCTGATGGTGATTACACATTTGAACCATAGGACGATTTC
CCTTTAGAGACAAATTGAGATAGACCCATGCCTGTCGTGGGACCCTGGCA
TAGGATCCAAGTATGTGCACTTGGACATAGAAACTGGCCCATCCAAGTCA
GGCTCATAGGAAAGACTGACCACAAAGAAATCAGACCACAGCTAACCAGT
GGGGAAAACTGGCATTTTTTCCCATTTTATCACACAAGGCAATAGGCCCG
TTCTCACAGTAAGGGGTAGGGTAACTTGGGAGAATAGTGGTAGTGGTTTT
AGTACACTGGCTTACAGATGGGGTTGGTATTTCTATCTTTACTCTTGACA
ATGAGACAACAGCCCAAATAATAGATCCCTTGGTATATCAGAATGCCAGG
GCTAACTGGGCTGGTAGAGCTTTGTGGCTTTGGCTCTTGGCTGACAGGCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m10.g1 MSMg01no502_m10.g1 CHROMAT_FILE:
MSMg01no502_m10.g1 PHD_FILE: MSMg01no502_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:54 2005
         (590 letters)



>mm_chr12_80885995_80886984
          Length = 990

 Score = 1089 bits (563), Expect = 0.0
 Identities = 584/591 (98%), Gaps = 2/591 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctcagtgcttgacacagactacatgtccaataaacattggttggcttagatgaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctcagtgcttgacacagactacatgtccaataaacattggttggcttagatgaaataa 260

                                                                       
Query: 61  acttctccagagttgacaagctgctatctgtaacttcagaattccaagtagagacacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttctccagagttgacaagctgctatctgtaacttcagaattccaagtagagacacatt 320

                                                                       
Query: 121 tggagtacaaaacatctcgctttttagaagggacagttgtagccaccgagtctggtgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tggagtacaaaacatctcgctttttagaagggacagttgtagccaccgagtctggggtaa 380

                                                                       
Query: 181 ccatttgaagaaacaagtatcactgatagatagagctgtgaacccctctgctatactctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatttgaagaaacaagtatcactgatagatagagctgtgaacccctctgctatactctg 440

                                                                       
Query: 241 atggt-gattacacatttgaaccataggacgatttccctttagagacaaattgagataga 299
           | ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 a-ggtagaaaacacatttgaaccataggacgatttccctttagagacaaattgagataga 499

                                                                       
Query: 300 cccatgcctgtcgtgggaccctggcataggatccaagtatgtgcacttggacatagaaac 359
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccatgcctctcgtgggaccctggcataggatccaagtatgtgcacttggacatagaaac 559

                                                                       
Query: 360 tggcccatccaagtcaggctcataggaaagactgaccacaaagaaatcagaccacagcta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggcccatccaagtcaggctcataggaaagactgaccacaaagaaatcagaccacagcta 619

                                                                       
Query: 420 accagtggggaaaactggcattttttcccattttatcacacaaggcaataggcccgttct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accagtggggaaaactggcattttttcccattttatcacacaaggcaataggcccgttct 679

                                                                       
Query: 480 cacagtaaggggtagggtaacttgggagaatagtggtagtggttttagtacactggctta 539
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 cacagtaaggggtagggtaacttgggaggatagtggtagtggttttagtacactggctta 739

                                                              
Query: 540 cagatggggttggtatttctatctttactcttgacaatgagacaacagccc 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagatggggttggtatttctatctttactcttgacaatgagacaacagccc 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)