BAC Information

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BAC

Clone NameMSMg01-502O12
Chromosome12 (Build37)
Map Location 117,491,420 - 117,491,794
singlet/doubletsinglet
Overlap geneWdr60
Upstream geneIgh, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058
Downstream geneLOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502O12.T7 (MSMg01no502_o12.b1)MSMg01-502O12.TJ (MSMg01no502_o12.g1)
ACCAG578148AG578149
length736708
length of high quality
(start - end)
375 (313 - 687)128 (63 - 190)
definitionCHROMAT_FILE: MSMg01no502_o12.b1 PHD_FILE: MSMg01no502_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:03 2005CHROMAT_FILE: MSMg01no502_o12.g1 PHD_FILE: MSMg01no502_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGTCGCTAAACGACTCACNATACGAACAGGAGCCGCGGAATTCCTTGG
TTACTCTAATAGAGCGACAGAAATCTAATACACACAGCAAAACAAACAGC
ATTTGACTTCTTTGTTTCTCCACCACATTCTTAATTTGTCCCCTCAATTT
AATTTGTCCCCGTAGTCCCTGTAGTCCCTGCTGCAGAGACTTTGTAACTG
GTTTCCTTTATTTCTGGAGAAATATGTTTAACTGATGTTCTCAGTTTTAT
AGGCAGATCACTACCTAAAGTCACTTGCCAAATAAACTATGAGAATTTAA
AAGTTAATGCNAAAGGACCTTTCCTTTAAAGACCCATAACAAAGCCCAAA
CAACTATTACATCACAACTATTACATGAAGTAGAAAGAGGGCTTGTTAAG
CATTCTGTGCACCAAAGGACAGACTTAATCTATGTCATTATTTGCCCTTT
ACTTATAAAAATAAAAGACTCCTCAAATTAAAAAAAAGCAACATAAATGC
CTGACAAGGAGTTAATTTTTTAAAGTAAACTGAAGACTAGCCACTAGAAG
GTAAGTGTTACACAAGTAGTAATTAGTGAACAGTGGTTAATTTCCATAAG
TAAACACCCATGCACCGGGCATGGTGGCGCACGCCTTTAAACCCAGCATT
TGGGAGGCAGAGGCAGGCGGAATTCTGAATTTGAGGCCAGCCTGGTCTAC
AGAGTGAGTTTCAGGACAGCAAGGGCTATACAGAGN
CCTGGCGGCGCCGGGTCCCTACTGTAGGNGAACTANAGAATTTCAGCAGC
AGCTCGGAACTTTCAGAGGGTATATAAATGCTAGGGCCCAGATAAATGTG
TGGTGGGATGGTTGGTGCTCATCTGGGGGGGTTGGTTGTGGTTTGTTTGT
AGTAGTGCTCAAAGAAGAAAAAAAAGGAAAAAAATTAGATTCAGAGAGCT
CTAGCTTTCTCTCCCTTCTCTATCCTTTTTTCTCTCCTATCTAGTGATAG
AAAGGTAGGAAAAAGAAAAATACACAAATTAGCCAATACCATCTTGATCG
TATCTCTTCCTTCTTGATGTAATTAACATTTATGAATTACTCAAGCAGCA
TATCTTTAATTTCTCTACTTTCCTCCCAATCATAATCAAAGCCACACAAA
GCCTGATGGATGCGCCACAGCCGACACACATCTGCCCCCTGTGAATGAAT
GGCACACACGAGTTTCAGTTACTTTCTTTTCCTTTATAAGGACTTCATAG
CAATGTGAGATAATTTCCTTAAGAATTCTAAATCATGCCTGCCTTTTATC
CAGGATACTCCCTGACTACCTGCTCAGTCCTACTCTAAAGCATGTATATC
TCTCCAAGGACCACAGGGGCTAATTTATTTTCTCTCGCCCGCTACCCAAT
AACTCAAAAAGAACCACTGCGCCATTTTAATCTAAGAAAAATTGGCCCTT
TCAGCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_o12.b1 MSMg01no502_o12.b1 CHROMAT_FILE:
MSMg01no502_o12.b1 PHD_FILE: MSMg01no502_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:03 2005
         (375 letters)



>mm_chr12_117491220_117491994
          Length = 775

 Score =  725 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacctttcctttaaagacccataacaaagcccaaacaactattacatcacaactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggacctttcctttaaagacccataacaaagcccaaacaactattacatcacaactatt 260

                                                                       
Query: 61  acatgaagtagaaagagggcttgttaagcattctgtgcaccaaaggacagacttaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgaagtagaaagagggcttgttaagcattctgtgcaccaaaggacagacttaatcta 320

                                                                       
Query: 121 tgtcattatttgccctttacttataaaaataaaagactcctcaaattaaaaaaaagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcattatttgccctttacttataaaaataaaagactcctcaaattaaaaaaaagcaac 380

                                                                       
Query: 181 ataaatgcctgacaaggagttaattttttaaagtaaactgaagactagccactagaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatgcctgacaaggagttaattttttaaagtaaactgaagactagccactagaaggt 440

                                                                       
Query: 241 aagtgttacacaagtagtaattagtgaacagtggttaatttccataagtaaacacccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgttacacaagtagtaattagtgaacagtggttaatttccataagtaaacacccatg 500

                                                                       
Query: 301 caccgggcatggtggcgcacgcctttaaacccagcatttgggaggcagaggcaggcggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccgggcatggtggcgcacgcctttaaacccagcatttgggaggcagaggcaggcggaa 560

                          
Query: 361 ttctgaatttgaggc 375
           |||||||||||||||
Sbjct: 561 ttctgaatttgaggc 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)