BAC Information

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BAC

Clone NameMSMg01-502P14
Chromosome12 (Build37)
Map Location 94,378,909 - 94,379,320
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039425, LOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P14.T7 (MSMg01no502_p14.b1)MSMg01-502P14.TJ (MSMg01no502_p14.g1)
ACCAG578200AG578201
length729741
length of high quality
(start - end)
411 (314 - 724)325 (321 - 645)
definitionCHROMAT_FILE: MSMg01no502_p14.b1 PHD_FILE: MSMg01no502_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005CHROMAT_FILE: MSMg01no502_p14.g1 PHD_FILE: MSMg01no502_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCAAACGACTCCTATTTCCAACTAGCGCGGAANCAANNATTT
ACATAAACATGGGCGNGNANACCNCNGATAAACATTTAAGAAGTAGAGGT
GGGAAGACCTTCATTTGGAGGACAGCATGGGTGGCATGGCAAATTCTTGG
ATGGCCTGAGCTATATATAAAGACACTGTCTTAAAGCAACTAAAGACAAA
CCAACAGCAACATACTTAATCTGAATTAAACTCAAAATATGTTAAAATCT
CTTTCAAATTATACCCAAGAGTAAAGCTTTCAATGTTATGCTCTGGGCAG
CCTTANTTTATATCTGTCAATCATTCTAGCCTCTGCACCATTTTTTTCCC
AATTCAAACCGTGTGGCAGAGAAGCAAAGAAGCTCATCAAATGAGCTTGC
AGATGCCAGCCTGAATGAAAACACCAAGCACCAAGTCTCACTGTGGATGT
TTGCACATCAGATTTTCTTGATAAGAAAATAGCAAATTTGTAATTTAGTC
AAGCATCACAGTTCAGACAATTCTTCCTTTGTTTTGAAAAAAAAGAAAAA
AGAAAAAAAAAGAAGACATAAAATACTACGGAGGGTTAATTATGTGTTTA
AATAGAAATGCCAAAAATATAAAGAGCAGACAAATAAAATATATTGTCCT
TTGGAATCTGCAAGAAATAATTTCAAAAGAGAGTTAATGATTTTCAAATT
AGGTAGGAAAAGTAACAAGAGAAATGTCC
CATGCTAGGGGAGGTCTGGNGGCCGCCTGGCTCAATAACTTCGGTGAACT
ATAGAAGTTTCCCAAAATTCCTTCTTTAGGTCCTCTACCATCATCATGAG
ATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTG
GATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGG
CTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCT
GGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGAT
TTTGTTACTCTCNNATAGTTGGCGTGGGAGACAAGCTCTCTTCTCTGAGT
TTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAG
GTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCC
CAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAAGAAGGTGGC
CAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTT
GCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCTGCCCCAGAA
TCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCC
ACACGGTCACCCGTGCAGCCTGCCCTCCGAGGAGTCCCGGAGCCAAGAAG
GCTCCTGCTGGCGCCTGTGCCACAAACCTCTCAGGCCAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p14.b1 MSMg01no502_p14.b1 CHROMAT_FILE:
MSMg01no502_p14.b1 PHD_FILE: MSMg01no502_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
         (411 letters)



>mm_chr12_94378897_94379708
          Length = 812

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%), Gaps = 3/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcaatcattctagcctctgcacca-tttttttcccaattcaaaccgtgtggcagaga 59
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 424 ctgtcaatcattctagcctctgcaccattttttttcccaattcaaaccgtgaggcagaga 365

                                                                       
Query: 60  agcaaagaagctcatcaaatgagcttgcagatgccagcctgaatgaaaacaccaagcacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agcaaagaagctcatcaaatgagcttgcagatgccagcctgaatgaaaacaccaagcacc 305

                                                                       
Query: 120 aagtctcactgtggatgtttgcacatcagattttcttgataagaaaatagcaaatttgta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aagtctcactgtggatgtttgcacatcagattttcttgataagaaaatagcaaatttgta 245

                                                                       
Query: 180 atttagtcaagcatcacagttcagacaattcttcctttgttttg-aaaaaaaagaaaaaa 238
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 atttagtcaagcatcacagttcagacaattcttcctttgttttgaaaaaaaaagaaaaaa 185

                                                                       
Query: 239 gaaaaaaaaagaagacataaaatactacggagggttaattatgtgtttaaatagaaatgc 298
           | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 184 g-aaaaaaaagaagacataaaatactacagagggttaattatgtgtttaaacagaaatgc 126

                                                                       
Query: 299 caaaaatataaagagcagacaaataaaatatattgtcctttggaatctgcaagaaataat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 caaaaatataaagagcagacaaataaaatatattgtcctttggaatctgcaagaaataat 66

                                                                
Query: 359 ttcaaaagagagttaatgattttcaaattaggtaggaaaagtaacaagagaaa 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ttcaaaagagagttaatgattttcaaattaggtaggaaaagtaacaagagaaa 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space:   322806
Effective search space used:   322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)