BAC Information

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BAC

Clone NameMSMg01-503F12
Chromosome12 (Build37)
Map Location 13,140,248 - 13,140,482
singlet/doubletsinglet
Overlap genenone
Upstream geneD12Ertd553e, LOC100043215, Mycn, EG668473
Downstream geneLOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503F12.T7 (MSMg01no503_f12.b1)MSMg01-503F12.TJ (MSMg01no503_f12.g1)
ACCAG578482AG578483
length720691
length of high quality
(start - end)
591 (79 - 669)234 (58 - 291)
definitionCHROMAT_FILE: MSMg01no503_f12.b1 PHD_FILE: MSMg01no503_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:35 2005CHROMAT_FILE: MSMg01no503_f12.g1 PHD_FILE: MSMg01no503_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTTTTATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCA
GAGGATCCGCGGAATTCTGTAATTTCCACTTAATGAGTCACCATAGTGAG
GGGTCAGAAGACTGAAAAGGCAAGGGAAAAACAAAGAGAAGAAGCTCGGA
TCATGGGTTTCAGGGGAGGGGGAGCAACAAGAACCCTATCATGAATGAGT
GGACTATCAGGCATTCACATTATAGTTTACCAAAGACTATGGCTTCACTT
GGTCTGTGTCCTGAGTATTTGAAGGAGACTTGTGTGTGTGTGTGTGTGTG
TCTGTCTGTCTGTCTGTCTGTGTGTATATAATAATGGACTAAATTTTTTT
GGTGGAGGAAATTTTAAAACAGCATAGCTTTACAGCTGTGGCATGATTAC
TTCTCACTAGTCTTTCTCAGTTCTGCAACGAGAGAGCAGAAAGACATGAA
AATGTGCCATTCAATGAAGAGAGAGGTGTTAGCAAGTGTGAGATTGAGGC
CAAGAAGGGGACAGAAAAAGCCGATGTGTTTGTTGAAGAGATTAATACCA
TTAAAGTGATATCTTCAGCTCTTTCCTGCACAACAGGAAAGGTGCCCCAA
GGATAAGACATTATCCACATTTTACAAAAAGATTTATCATGTGTTTTGCT
TACATGCATATCTGCAGGCCAGAATAGGATACCATATTTCAATATAGATA
GTTATGAGCCACCATGTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCTTTCCTTACAGTATAGAGGTGGGAGCCATCATCACCCAGG
CTTGCCCATGCATACCAGCATCTGTCCACATCTGCCCTCTCCTCTTTCTT
CAGTATAGGCGCATGTCTCATGTGGTGGAGACAAAAATACAACATGATCA
TTCCCAGAGGCCATCGCAGTGAAAGGGGCAAAGGTGATTTCTGTATGTCT
GTGTCCTTCCACCTGATCCTGGGTCTTAGATGTCCCCTGGGTGTTTTGAC
TTTAAGTCTCTGGAGAGGAAGCATGACTGACAAACACAGAGGTCACAGAG
CCATAACCAATGGCTCATCTGTTCCCTGTTGATGCCTCTTGCTGAGTCCC
CTTAGCCTGACATCCCCACCCCATACAGTTTGTTCCCTCTGCTCCCTTAC
TGGACAAGTGGTTATCTGCAGAAACCCAAATCTGCTGCAGCTGAAGTTTG
CATCTGACATGTCTGCCTAGAGTTGACTTCTGAATGCCCAGATCCCCTGT
GTTAGAGTTCCAGGAAAGAAGTGAGTCCTAAATTTGGACTTGTTGCCAGA
GTCTTGAGGTCTCTCACATAACAGAGATGCACATCTGGAAGATGCTGACA
GATATCTCCCTGGAGGGGAGGCCCCGCTGGTGAGAACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_f12.g1 MSMg01no503_f12.g1 CHROMAT_FILE:
MSMg01no503_f12.g1 PHD_FILE: MSMg01no503_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:36 2005
         (234 letters)



>mm_chr12_13140048_13140682
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctttccttac-agtatagaggtgggagccatcatcacccaggcttgcccatgcatacc 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcctttccttacaagtatagaggtgggagccatcatcacccaggcttgcccatgcatacc 376

                                                                       
Query: 60  agcatctgtccacatctgccctctcctctttcttcagtataggcgcatgtctcatgtggt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 375 agcatctgtccacatctgccctctcctctttcttcagtataggcgcatgtctcacgtggt 316

                                                                       
Query: 120 ggagacaaaaatacaacatgatcattcccagaggccatcgcagtgaaaggggcaaaggtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggagacaaaaatacaacatgatcattcccagaggccatcgcagtgaaaggggcaaaggtg 256

                                                                  
Query: 180 atttctgtatgtctgtgtccttccacctgatcctgggtcttagatgtcccctggg 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atttctgtatgtctgtgtccttccacctgatcctgggtcttagatgtcccctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)