Query= MSMg01no503_l14.b1 MSMg01no503_l14.b1 CHROMAT_FILE:
MSMg01no503_l14.b1 PHD_FILE: MSMg01no503_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:05 2005
(537 letters)
>mm_chr12_87085811_87086747
Length = 937
Score = 957 bits (495), Expect = 0.0
Identities = 523/537 (97%), Gaps = 9/537 (1%)
Strand = Plus / Plus
Query: 1 aaccctgtctcaaaaagaccaagccaaaacagacaaaaaaggcaaaacaaaaacaccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccctgtctcaaaaagaccaagccaaaacagacaaaaaaggcaaaacaaaaacaccacc 260
Query: 61 aggtttccaggagccacccaggctgcagctcagactgctcttatgtaactgtgtggtagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttccaggagccacccaggctgcagctcagactgctcttatgtaactgtgtggtagc 320
Query: 121 ttgaatgatgggaagtatgacttttcaggccagctgggaccttagttaactgagttctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaatgatgggaagtatgacttttcaggccagctgggaccttagttaactgagttctaa 380
Query: 181 aaggcttgttttcttgtctatagcacgaggcaagaaggccgagagcttacagctcgatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggcttgttttcttgtctatagcacgaggcaagaaggccgagagcttacagctcgatgt 440
Query: 241 tttcaaagccttgagtgcgtgcacatacaccatacacatgcacacatacagacacacaca 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcaaagccttgagtgcctgcacatacaccatacacatgcacacatacagacacacaca 500
Query: 301 tacggggcaagcaatagtaactacattatagaatgcccggcatgctcacccatgaagcac 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagggcaagcaatagtaactacattatagaatgcccggcatgctcacccatgaagcac 560
Query: 361 atttaccccgtggcaacaaatgctagccttttggcaggataggaaacatttgttgaacga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttaccccgtggcaacaaatgctagccttttggcaggataggaaacatttgttgaacga 620
Query: 421 attatcagccagggatttttcttttttctttttttggtttttttttttttttcgagacag 480
||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 621 attatcagccagggatttttctttttt-ttttttt--------tttttttttcgagacag 671
Query: 481 ggtttctctgtataggcctggctgtcctggaactcactctgtagaccaggctggcct 537
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggtttctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcct 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_l14.g1 MSMg01no503_l14.g1 CHROMAT_FILE:
MSMg01no503_l14.g1 PHD_FILE: MSMg01no503_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:05 2005
(458 letters)
>mm_chr12_87254155_87255011
Length = 857
Score = 851 bits (440), Expect = 0.0
Identities = 455/462 (98%), Gaps = 5/462 (1%)
Strand = Plus / Minus
Query: 1 accacagcgctcctatgctagtctctcgcatcctaagattgcacacaccagcctttacac 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 491 accacagcgctcctatgctagtgtctcgcatcctaagattgcacacaccagcctttacac 432
Query: 61 tcagcttttaaacagtctttatgtctaagtttttttttttcttttctccaacttcacaac 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 431 tcagcttttaaacagtctttatgtctaag-ttttttttttcttttctccaacttcacaac 373
Query: 121 tggtggtaatatacccaggaagtctattacctgaccaaatgttatagaaaacttctgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggtggtaatatacccaggaagtctattacctgaccaaatgttatagaaaacttctgact 313
Query: 181 tttgtttgaaaataagctacatgaatttatttcagttttcccttaaaaggcaatcagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttgtttgaaaataagctacatgaatttatttcagttttcccttaaaaggcaatcagaat 253
Query: 241 gacttccttaaaagaaaagttagatttatgcttcagaaagcttgtagtagatgacgggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gacttccttaaaagaaaagttagatttatgcttcagaaagcttgtagtagatgacgggat 193
Query: 301 ggccctgtgggtagagtaacttgttgtacaagcctggcaacccgactttgattacgggaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 192 ggccctgtgggtagagtaacttgttgtacaagcctggcaacccgactttgattacgtgaa 133
Query: 361 ctcaggaagtaaaggaggaagaagagaatcaactccgtaaatatcttccttgcctcacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctcaggaagtaaaggaggaagaagagaatcaactccgtaaatatcttccttgcctcacac 73
Query: 421 atgtgc----cgtgcgtggcacaagtacccacatgatcgtgt 458
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 72 atgtgccgtgcgtgcgtggcacaagtacccacatgatcgtgt 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 857
Length adjustment: 10
Effective length of query: 448
Effective length of database: 847
Effective search space: 379456
Effective search space used: 379456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
