Query= MSMg01no504_a08.b1 MSMg01no504_a08.b1 CHROMAT_FILE:
MSMg01no504_a08.b1 PHD_FILE: MSMg01no504_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:29 2005
(664 letters)
>mm_chr12_92325524_92326587
Length = 1064
Score = 1108 bits (573), Expect = 0.0
Identities = 593/603 (98%), Gaps = 7/603 (1%)
Strand = Plus / Plus
Query: 5 gaattccatttatccgtgaaatacacattatctagtatgtactgctaataaataatttaa 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttataagtgaaatacacattatctagtatgtactgctaataaataatttaa 264
Query: 65 aggggctgaaaggaagctgctttagggaaggcttgaagggtcatcaaataagctcccctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggggctgaaaggaagctgctttagggaaggcttgaagggtcatcaaataagctcccctc 324
Query: 125 ctgttttgagacagacccccatagtgtcatggtggaactaaatgctttaaatgacagtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgttttgagacagacccccatagtgtcatggtggaactaaatgctttaaatgacagtaa 384
Query: 185 tttaagaacccctgatatatgctaatctcctcatatcttacagatgaggactgagctcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaagaacccctgatatatgctaatctcctcatatcttacagatgaggactgagctcta 444
Query: 245 agacattccatgcccacaggccttctacactggaccttgttttttttttttttttttatg 304
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 agacattccgtgcccacaggccttctacactggaccttgtttttttttttt------atg 498
Query: 305 aaataatgactaccctcctctatatttcaagacttgcactgaaatgttctaccatcccct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaataatgactaccctcctctatatttcaagacttgcactgaaatgttctaccatcccct 558
Query: 365 cttcaaccgcacatgcttatccagcatctctttcacaaactgaaagaaaacttcactgat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttcaaccgcacatgcttatccagcatctctttcacaaactgaaagaaaacttcactgat 618
Query: 425 ggtcagcaatctggaagaagtctacctgtgcctggctgggcgtctacactgtggctctcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtcagcaatctggaagaagtctacctgtgcctggctgggcgtctacactgtggctctcc 678
Query: 485 gctccaggttgcctcacacgtgactga-ggaaagcaaacgctcacagttgagaaaccaga 543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 679 gctccaggttgcctcacacgtgactgaaggaaagcaaacgctcacagttgagaaaccaga 738
Query: 544 cgtttagaatatcagcatacaacaaaagaaatatcttataaaacaaaacaataaggaaat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cgtttagaatatcagcatacaacaaaagaaatatcttataaaacaaaacaataaggaaat 798
Query: 604 att 606
|||
Sbjct: 799 att 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_a08.g1 MSMg01no504_a08.g1 CHROMAT_FILE:
MSMg01no504_a08.g1 PHD_FILE: MSMg01no504_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:29 2005
(573 letters)
>mm_chr12_92498113_92499085
Length = 973
Score = 1077 bits (557), Expect = 0.0
Identities = 569/573 (99%)
Strand = Plus / Minus
Query: 1 cctcgacaccatccatagactggagaatgagttgaaaagacagagtaagagtcaaagcca 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cctcgacaccatccatagattggagaatgagttgaaaagacagagtaagagtcaaagcca 714
Query: 61 gataaaggccgagaaaattcacctggaggaagaaattacagagctcaagaagagtcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gataaaggccgagaaaattcacctggaggaagaaattacagagctcaagaagagtcagtc 654
Query: 121 ccaggacaaagtcaaactccttgagatgcaagagtccatcaaggacctgagtgccatccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccaggacaaagtcaaactccttgagatgcaagagtccatcaaggacctgagtgccatccg 594
Query: 181 agcagatctcgctaataaactggctgaggaggagaaagccaagaaagctgtgttcaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agcagatctcgctaataaactggctgaggaggagaaagccaagaaagctgtgttcaggga 534
Query: 241 cctttctgagctgacagcccaggtaaaatcgaaagaagaagaaaccgccaccgctatcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 533 cctttctgagctgacagcccaggtaaaatcgaaagaagaagaaaccgccacggctatcac 474
Query: 301 acagttaaagttagaacgagacgttcaccagagggagctggaagaccttagctcctcgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acagttaaagttagaacgagacgttcaccagagggagctggaagaccttagctcctcgtt 414
Query: 361 ggagagtgtgaagttgaagcacgagcagaatatccaggagctgatgaagcactttaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggagagtgtgaagttgaagcacgagcagaatatccaggagctgatgaagcactttaagaa 354
Query: 421 ggagaagagtgaagccgagagccacatcaggacgctgaaggtacccgtgctccattatct 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 ggagaagagtgaagccgagagccacatcaggatgctgaaggtacccgtgctccattatct 294
Query: 481 tgatgatactgacggactttctttttttggtggctcatgaagttaataaagcataaactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgatgatactgacggactttctttttttggtggctcatgaagttaataaagcataaactt 234
Query: 541 ttagagatcattcggtgtccccaagcattgcag 573
||||||||||||| |||||||||||||||||||
Sbjct: 233 ttagagatcattccgtgtccccaagcattgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
