BAC Information

Click to search

BAC

Clone NameMSMg01-504G11
Chromosome12 (Build37)
Map Location 64,993,686 - 64,994,302
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382606
Downstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504G11.T7 (MSMg01no504_g11.b1)MSMg01-504G11.TJ (MSMg01no504_g11.g1)
ACCAG579291AG579292
length726736
length of high quality
(start - end)
451 (57 - 507)617 (76 - 692)
definitionCHROMAT_FILE: MSMg01no504_g11.b1 PHD_FILE: MSMg01no504_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:00 2005CHROMAT_FILE: MSMg01no504_g11.g1 PHD_FILE: MSMg01no504_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTCTTACCTTATCTTCTCCAGTACAATATGTAGT
TAGAATCAGACAGTATGTAGCTTTTTAAAGATTGGGTCTTTCTTTCACTT
AACAAGGTTAATGAATATGCTTTTAGGAATTGATGGCCCACATTCTTTTT
TTTTTTTTTTTTTTTTTTTTGGGGGTGGTGCTTTTGTCCCCGCCGGCAAG
AGCACACTCAGGACAACCGGAATCTTCTGCTGCAAAAGCTTTATTGCTTA
CTTCTCAGGAGGGAAGACCCCGAAACGGGAAAATGGCGCTGCTTATATAG
CCCGCAGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCTCCTGATTC
TTTGCTCGCCCATCACCCCATTACTACGCTGCGAGATGGGCAGTGACTAA
GTTCACTAAAGTTCACTCTTGCATTTGCACACAAGGCTTGGTTACTAATT
AGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCAATTGCTCACTGCAC
GCACGCGATTGGTCGCCACACGGCTCTCCACAGTGGGGTTCAGTGTGGGG
TTGGTTTTTTAAGACAGGGTTTCTCTGTATAGCACTGGCTGTCCTGGAAC
TCACTTTGTAGACCAGGCTGGAGATGGCCCACATTCTTGTAGTTTAGAAA
CTCATATTATTCTGTCTGAATAACCN
NGGGGAAGCGATGAAGTGGGAGGCCTGGNGGCCGCCTTTTCAAAAAGTTA
GGTGAACTATAGTTGCATCAAGGAATTCAATTTGAAAGAGAAATTTGACT
TCGACTAGGGGAAATAAAATAAGCAGGCCTTAGAACGTTAACCTACTAAA
CCTCAATTTAAAAAGCATTCAGTTCCTCCAGGTCAGTAAAATGCACACAG
CCTTGTTGGAGTTCACTCTTACCAGTGTCTAAGCTTAGAACTTTAAATGG
ACTGAAGTTTGGAACAGTCTTTGATGGTAAAGCATATAATTCCAACACCC
TAAACTCTTCTGCTACATTTGTTATAGCAAAATTTTGAACTCATTCAAGG
ATCAAAAGTCAGCAGACTTCCAAATATTAACATTCTTGAAGTAGCTGTGA
CACTGCCATCCTTCATTGTAGACCTCAAATTAATATAGTCGTGTTTTCTA
AATCAACAGACCCAAGGGAAAGAAGCTCCTTTTTCTGTCATTGGAACCTC
CAGTTACAGGAATTTATAGCATGTTTCTTTAGTTGATTGAACACAAACAT
CTGATTTTCAAATTATGTTTTATATATAATGTCCATTTTTATAATTTTTG
AAGGATATAATAATTCAAGTGTCACGGATACGTTTTAAAAATCCAGATGA
CTCCCATTACATACTCCAGTCTAATGAGTTATACTAAATGAGGTTTTCAA
ATCATCTTGCAAAATGAACAATTTAACTGTATTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_g11.g1 MSMg01no504_g11.g1 CHROMAT_FILE:
MSMg01no504_g11.g1 PHD_FILE: MSMg01no504_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:00 2005
         (617 letters)



>mm_chr12_64993486_64994502
          Length = 1017

 Score = 1170 bits (605), Expect = 0.0
 Identities = 614/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaatttgaaagagaaatttgacttcgactaggggaaataaaataagcaggccttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaatttgaaagagaaatttgacttcgactaggggaaataaaataagcaggccttagaa 260

                                                                       
Query: 61  cgttaacctactaaacctcaatttaaaaagcattcagttcctccaggtcagtaaaatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttaacctactaaacctcaatttaaaaagcattcagttcctccaggtcagtaaaatgca 320

                                                                       
Query: 121 cacagccttgttggagttcactcttaccagtgtctaagcttagaactttaaatggactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagccttgttggagttcactcttaccagtgtctaagcttagaactttaaatggactga 380

                                                                       
Query: 181 agtttggaacagtctttgatggtaaagcatataattccaacaccctaaactcttctgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttggaacagtctttgatggtaaagcatataattccaacaccctaaactcttctgcta 440

                                                                       
Query: 241 catttgttatagcaaaattttgaactcattcaaggatcaaaagtcagcagacttccaaat 300
           |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattagcaatagcaaaattttgaactcattcaaggatcaaaagtcagcagacttccaaat 500

                                                                       
Query: 301 attaacattcttgaagtagctgtgacactgccatccttcattgtagacctcaaattaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaacattcttgaagtagctgtgacactgccatccttcattgtagacctcaaattaata 560

                                                                       
Query: 361 tagtcgtgttttctaaatcaacagacccaagggaaagaagctcctttttctgtcattgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtcgtgttttctaaatcaacagacccaagggaaagaagctcctttttctgtcattgga 620

                                                                       
Query: 421 acctccagttacaggaatttatagcatgtttctttagttgattgaacacaaacatctgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctccagttacaggaatttatagcatgtttctttagttgattgaacacaaacatctgat 680

                                                                       
Query: 481 tttcaaattatgttttatatataatgtccatttttataatttttgaaggatataataatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcaaattatgttttatatataatgtccatttttataatttttgaaggatataataatt 740

                                                                       
Query: 541 caagtgtcacggatacgttttaaaaatccagatgactcccattacatactccagtctaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagtgtcacggatacgttttaaaaatccagatgactcccattacatactccagtctaat 800

                            
Query: 601 gagttatactaaatgag 617
           |||||||||||||||||
Sbjct: 801 gagttatactaaatgag 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)