BAC Information

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BAC

Clone NameMSMg01-504K14
Chromosome12 (Build37)
Map Location 111,668,007 - 111,668,581
singlet/doubletsinglet
Overlap genenone
Upstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245
Downstream geneLOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504K14.T7 (MSMg01no504_k14.b1)MSMg01-504K14.TJ (MSMg01no504_k14.g1)
ACCAG579487AG579488
length1,327777
length of high quality
(start - end)
---585 (76 - 660)
definitionCHROMAT_FILE: MSMg01no504_k14.b1 PHD_FILE: MSMg01no504_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:19 2005CHROMAT_FILE: MSMg01no504_k14.g1 PHD_FILE: MSMg01no504_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTCTCCCCCTTCCNGTGTGNTTCNCTTACTCGACCGCTCTCTTCTT
CTCCCGACGAGAGCTCAGAGGTAATAACGCTTGGGGCGTGTGCCGCGCTA
TTAACGGCGAATTTGGCGCTCTGTCTAATTGGTGTTCTTATATCTCTCGC
CCCTTCCCATCGCACTGTGTTCATTACACACACCACTCACTCTCACGCTC
CCCTCCGCCCCGCGCTGTGTCTCGCTGTTGGCCCTTATATGTATCCGAGT
GATGTGACCGACCCTGTTATACCAACCCCCTCGATTATAAAACCTATCAT
TCCTTATGTCGCACATTCTCATTTGTCTGTCCTCGTTCCCGTGCTGTCGT
GACGCGCGCTGGTCAGTTCCTATTTAGATTGTCGGTCGTGCTCCCCAGAG
AATAGGAGCCATCGCGAAGTCGGCCAGACATATCATTAAGTATAGATCGA
CGCGAGCACGCCCTCTTTATCATACTTTCTTGTCACTTCGCCCGCCTCTC
TTGCTGTCCTACGCTCCTCATTATATATTTCTTGCCGCGTTCGCACGGTG
CTACATAATATCTCGACTGCGTGATGAGACTACGCGCCGATTCTTATACT
ATTTTATGCATTATCACAACCTCGTGCATGACCTGGGGCGCAGTAGTGGT
AGTTATCAAGACGGAGTCGATAGGTCCGTCCGCGTGCCGGTTCTTGTCGT
CTGCTCGCCGCACACTCCTGTACCACGCAATCACTCATGTAGTTGCGTGG
TGTACCGCCGTTACAAGAACTTCATTATCGGTCCGTTCAGGCGCGCGATT
TCCACTTGATATAGTGCGGGGTGGAACCGCTCCAAGGCGTGGCGTGGCCT
AGAGTGGTTATGGGATGCTGGTCTTATTCCGCCTGGCNGCATAGTGCGCG
CGAGTGTCCCGCTGTCTGTCGAGTTCGGTGATCTCTCCTCATACCTACCG
CCGTCCGTGGTTCTCAGTGCTCCGATGGCGGCTAGCATCTCGATTACCAT
GGTCAGCATGTGCGCCGACGCGCCGACTATAGCCTGGTACCTTACGACGT
CGACTTTAATACGTCTGGTTTATATACCGCTACGACGCCGTCATTGTGCG
CATATTACTACGCTCTCTCCTTGCGCTCATCGTTTACCTCNTAGCTAAAT
GGGATCCGTACNGTCGTGTGTGCGCCGATTATCTCTTCTCTCCTCTACCT
CCCCNTGCTGTTTTGGCGCCCGCGGATAGCGATAATGTAAGTATATCTTG
TTTTCTGCTTACGCCGGCGCGTGACTTTGATTGCTCACGCGACGTCGTTA
TTATCTGAACTGTAATGTCTCGTGCCG
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCACTTTGTCCGGGCTCAGCTCAG
AACCGACCCAGAGCTGCCCTTTGGATACAAATGAAGCCAGGGACCCCAAA
ACAGGCCCAGCTGCGAAAGGAAAACCCTTAACAAAGGAGCTCACTGAGCC
CAGCCTCAGCACTGCTGTGGACACAACCCGTCACCAGACAAAGCCTTTGC
TTTCCTTTGTATCTGGTGCGGCTCCCGAAGCCAGGGCTGGAAGCTGGAAG
CTGAGCGTCATGTTCCGTCTTCTTCTAAGACCACATCTCCACTGATCCAC
CTCCCCTGCGGCCTAAGGCTGCTGCCTGCGGATCTCAGCCTCCGTCTGTT
CCCCTTGGGAAAGAGAGAAGGGCAGAAATAAGCCTAGTGTCTGGGGGTGC
TTTCCTGGGTAGAGGCGTGGGCTCATGCCTGCTCAGTCTTCGAAGCTGAA
AAAGCTACACAGGGGATAGGAAAGAGCTCTAGCTCTTTTCACTGTGTCTA
GAGGTGAGGTATCTGCACCCCTCTCCTGACCTGGACAGGCCCTGAGACTA
GTAACCTCACTGGCACTGAGCTGTGTACAAAATGGGGAGGAGCTTCCATC
ATTCTCAACCTGGGTTTACAGCGTGGCCCCGCCCCGGGAGGGTTTACAGC
CTAACCCCGCCCCAGGAGGAAATGTTGGCCTTGAGTGGGTACTAAGGCAC
AANTCAGCCACAGCCCCCAGTTACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_k14.g1 MSMg01no504_k14.g1 CHROMAT_FILE:
MSMg01no504_k14.g1 PHD_FILE: MSMg01no504_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:19 2005
         (585 letters)



>mm_chr12_111667597_111668581
          Length = 985

 Score = 1023 bits (529), Expect = 0.0
 Identities = 557/575 (96%), Gaps = 14/575 (2%)
 Strand = Plus / Minus

                                                                       
Query: 25  gaaccgacccagagctgccctttggatacaaatgaagccagggaccccaaaacaggccca 84
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 985 gaaccgacccagagctgccctttggatacaaatgaggccagggaccccaaaacaggccca 926

                                                                       
Query: 85  gctgcgaaaggaaaacccttaacaaaggagctcactgagcccagcctcagcactgctgtg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gctgcgaaaggaaaacccttaacaaaggagctcactgagcccagcctcagcactgctgtg 866

                                                                       
Query: 145 gacacaacccgtcaccagacaaagcctttgctttcctttgtatctggtgcggctcccgaa 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gacacaacccgtcaccagacaaagcctttgctttcctttgtatctggtgcggctcccgaa 806

                                                                       
Query: 205 gccagg--------------gctggaagctggaagctgagcgtcatgttccgtcttcttc 250
           ||||||              ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 gccagggctggaagctggaagctggaagctggaagctgagcgtcatgttccttcttcttc 746

                                                                       
Query: 251 taagaccacatctccactgatccacctcccctgcggcctaaggctgctgcctgcggatct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taagaccacatctccactgatccacctcccctgcggcctaaggctgctgcctgcggatct 686

                                                                       
Query: 311 cagcctccgtctgttccccttgggaaagagagaagggcagaaataagcctagtgtctggg 370
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagcctccatctgttccccttgggaaagagagaagggcagaaataagcctagtgtctggg 626

                                                                       
Query: 371 ggtgctttcctgggtagaggcgtgggctcatgcctgctcagtcttcgaagctgaaaaagc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtgctttcctgggtagaggcgtgggctcatgcctgctcagtcttcgaagctgaaaaagc 566

                                                                       
Query: 431 tacacaggggataggaaagagctctagctcttttcactgtgtctagaggtgaggtatctg 490
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacacaggggttaggaaagagctctagctcttttcactgtgtctagaggtgaggtatctg 506

                                                                       
Query: 491 cacccctctcctgacctggacaggccctgagactagtaacctcactggcactgagctgtg 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacccctctcctgacctggacaggccctgagactagtaacctcactggcactgagctgtg 446

                                              
Query: 551 tacaaaatggggaggagcttccatcattctcaacc 585
           |||||||||||||||||||||||||||||||||||
Sbjct: 445 tacaaaatggggaggagcttccatcattctcaacc 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)