TCCCTTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTATTATCCGGTTATTTCATTATTATTAGTTCTGA
GATAGGGTCGCTCATTGAGCCTGAAGCTCATGGATTAGGACAAGCTAGCT
GGCCAGTCAGTTTCAGGATCTTACCTATCTCTGCCTCTTAAGTACTGGGG
TTACAAGTCTACATCATCATGTCATTTTTTTTTTAATGTAGGTACTGGGT
GTTAAATTTCAGGCATGTGTGGAAGATGCCTTACAAACAAAGTTATCTTG
CAGTCTCTTAATTTGAGTTATTAATTATTGAAAAATAAAGAACAAGGAAG
GCCAAACATTATAGAGAAGCTCTAGATCCTGATGAACTTTCTCTTGCCTT
CTAGGTATCTTATTGGGGTGGGTGGAGTGCAGAAACCAAATAAACTCTCT
GGTATATACTCAAAATAACATACTAGAGAAAACTTCACTCTGAAAGAACC
CAAATGATCAATCTCCCAACCTATATTTAAGATAATGAAAACAACAAAAC
AAAACAAAACACAACAAACAAACAAACAAACCAACAAACAAACAAAACCC
CAGAACATCCCTGGTTACTGAACCAGAGTCAATGCCATCAAAGATTAAGA
ACTGTTATTCACCCCCAGGCTGTGTGTTCTAGGCATTTTGGAACCTCTTT
ATTCACACATTATCAAGTGTTTATTCTTGAGTAAAGATGAAATATTTGAA
AAAAAACC

CTCTCGCAATAATGTGGGTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGAACTCAAT
TTTTTAATTGAGTTGTTTGATTTTGTGGATTTCGGGTTCGTGACTTCTTT
ATATATTTTTGATATTAGCCCTCAATCTCCTATGGGGTTCATGAAGGTTT
TTTTCCCAATCTGTACAATACTCAGAACTCATGATAGTCAACAAGCAGAA
GGGCCCAAGTGAGGATCATTTCAATCCCACTTTGGGAGTGGTAAAGTAAC
AATTCACTGGGAGACTTATATAGATAAGACAGAGATAGAGAGATTATATA
TAGAGAGTAATAGAGAGTCCTTGTTTGGGTAACGGGTTATTATGTAGGAA
AAAAAGGGGAACAACTTTCTGGGTTTGGATGTGGGGTGGCTTCTTTTTTT
TATATTTTTGGTGTATTTTTCTCTCTCTTTTCCCCCACCCTCTCTTTTTA
TCGTTTTTTTATCTTATCCTTTTTTTTTTATCCTTTCCCCTCCCCCTTTT
TTTTTTTTTTTTTTTTTTTCTTCCCCTCTCCCCCTTCTCCCTTTTTTTTT
TTGTCTCTTTTTTGCTCTTTTCTACTCTTCTACTTTTGCTTCCCTCCTTT
TCTTAGAGTCTTATCTTTTCTTTATTTTGGTTTTGCTCCCCCCTGTCGTC
CCCTATTTTTTCTCTCTCTCTTTTTTTTATTCTTTCTCTTCTTTCGTTTT
TTTTTTTTTATTCCGCGGCTGC

Query= MSMg01no504_n24.b1 MSMg01no504_n24.b1 CHROMAT_FILE:
MSMg01no504_n24.b1 PHD_FILE: MSMg01no504_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:38 2005
         (572 letters)



>mm_chr12_47279032_47280003
          Length = 972

 Score = 1002 bits (518), Expect = 0.0
 Identities = 554/570 (97%), Gaps = 10/570 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctattatccggttatttcattattattagttctgagatagggtcgctcattga 64
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 gaattctctatcatccgattatttcattattattagttctgagatagggtcgctcattga 885

                                                                       
Query: 65  gcctgaagctcatggattaggacaagctagctggccagtcagtttcaggatcttacctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gcctgaagctcatggattaggacaagctagctggccagtcagtttcaggatcttacctat 825

                                                                       
Query: 125 ctctgcctcttaagtactggggttacaagtctacatcatcatgtca--ttttttttttaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 824 ctctgcctcttaagtactggggttacaagtctacatcatcatgtcattttttttttttaa 765

                                                                       
Query: 183 tgtaggtactgggtgttaaatttcaggcatgtgtggaagatgccttacaaacaaagttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgtaggtactgggtgttaaatttcaggcatgtgtggaagatgccttacaaacaaagttat 705

                                                                       
Query: 243 cttgcagtctcttaatttgagttattaattattgaaaaataaagaacaaggaaggccaaa 302
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttgcagtcccttaatttgagttattaattattgaaaaataaagaacaaggaaggccaaa 645

                                                                       
Query: 303 cattatagagaagctctagatcctgatgaactttctcttgccttctaggtatcttattgg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cattatagagaagctctagatcctgatgaactttctcttgccttctaggtatcttattgg 585

                                                                       
Query: 363 ggtgggtggagtgcagaaaccaaataaactctctggtatatactcaaaataacatactag 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 584 ggtgggtggagtgcagaaaccaaataaactctctggtatatactcaagataacatactag 525

                                                                       
Query: 423 agaaaacttcactctgaaagaacccaaatgatcaatctcccaacctatatttaagataat 482
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 524 agaaaacttcactctgaaagaacccaaatgatcaatctccctacctatatttaagataat 465

                                                                       
Query: 483 gaaaacaacaaaacaaaacaaaacacaacaaacaaacaaacaaaccaacaaacaaacaaa 542
           ||||||||||||||||||||     |||||||||||||||||||| ||||||||||  ||
Sbjct: 464 gaaaacaacaaaacaaaaca-----caacaaacaaacaaacaaacaaacaaacaaa--aa 412

                                         
Query: 543 accccagaacatccctggttactgaaccag 572
           |||| |||||||||||||||||||||||||
Sbjct: 411 accc-agaacatccctggttactgaaccag 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)