Query= MSMg01no505_c06.b1 MSMg01no505_c06.b1 CHROMAT_FILE:
MSMg01no505_c06.b1 PHD_FILE: MSMg01no505_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:58 2005
(566 letters)
>mm_chr12_87788316_87789282
Length = 967
Score = 337 bits (174), Expect = 2e-96
Identities = 228/252 (90%), Gaps = 13/252 (5%)
Strand = Plus / Minus
Query: 227 taaagaccatttcttataagattgttcgtaatgtccagagtgacaggaaaagaccagaga 286
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 587 taaagaccatttcttataagaaggttcgtaatgtccagagtgacaggaaaagaccagaga 528
Query: 287 ggcagctaaactctgtatgtatttgacatctggctataataggcctcc-gcactctgaag 345
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 527 ggcagctaaactctgtatgtatttgacatctggctacaataggcctcctgcactctgaag 468
Query: 346 aaggtactcatgagtgtgtgctgctgctatagagacagcttttatttatttatttattta 405
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 467 gaggtactcatgagtgtgtgctgctgctatagaaacagcttttatttatttatttattta 408
Query: 406 tttatttatttatttatttatttatttatttatttatttataca-ttgttattgttgttt 464
|||||||||||||| ||| ||| ||| ||| | || || || |||||||||
Sbjct: 407 tttatttatttattcattcattcattcattca----------cactt-ttgttgttgttt 359
Query: 465 gtttgtttgttt 476
||||||||||||
Sbjct: 358 gtttgtttgttt 347
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 391 ttatttatttatttatttatttatttat 418
||||||||||||||||||||||||||||
Sbjct: 281 ttatttatttatttatttatttatttat 254
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 387 ttatttatttatttatttatttatttat 414
||||||||||||||||||||||||||||
Sbjct: 281 ttatttatttatttatttatttatttat 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 3
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_c06.g1 MSMg01no505_c06.g1 CHROMAT_FILE:
MSMg01no505_c06.g1 PHD_FILE: MSMg01no505_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
(608 letters)
>mm_chr12_87625039_87626046
Length = 1008
Score = 1152 bits (596), Expect = 0.0
Identities = 605/608 (99%)
Strand = Plus / Plus
Query: 1 attcagcttctttcttaagcatgcagccacaaatctctgcccttcccccacccgtagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcagcttctttcttaagcatgcagccacaaatctctgcccttcccccacccgtagaaa 260
Query: 61 gttttgagttgaaattgactgaatttaaagatctcagtactgctggaggggtgaagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgagttgaaattgactgaatttaaagatctcagtactgctggaggggtgaagaaag 320
Query: 121 gaagggacacccaggtcttccttgctctgtttgcgtgtttgtttgaatggtacaaaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagggacacccaggtcttccttgctctgtttgcgtgtttgtttgaatggtacaaaggct 380
Query: 181 gggaaaggatccttgcagggtcattaggtagatccttccaggacgagagcactgttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaaggatccttgcagggtcattaggtagatccttccaggacgagagcactgttattt 440
Query: 241 tctactctttgtctctacttcccttccctccctggctttacagcaggtagagctttagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctactctttgtctctacttcccttccctccctggctttacagcaggtagagctttagca 500
Query: 301 cgcagctgtttcctggatcctagtgagtacgcatgcaggccttttctaagactggtgccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 cgcagctgtttcctggatcctagtgagtacgcatgcaggccttttctaagactggtaccc 560
Query: 361 aggctctaccgcacgctggatcaaactagctgtattaggcacataaatgtagttgggggg 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggctgtaccgcacgctggatcaaactagctgtattaggcacataaatgtagttgggggg 620
Query: 421 tgggaatgggaaaaaaccattttcttcgaaacttgagagtcagtggctgtgagaacttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 tgggaatgggaaaaaaccattttcttcgaaacttgagagtcagtggctgtgagaatttta 680
Query: 481 aggcacccaggctctcactgagacatgctgctcaaagtgattttcctcatcagagccctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcacccaggctctcactgagacatgctgctcaaagtgattttcctcatcagagccctt 740
Query: 541 gacatgcaaacctttgccttcaaaaggtaaaccatggcttttagaataggggaactgggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacatgcaaacctttgccttcaaaaggtaaaccatggcttttagaataggggaactgggg 800
Query: 601 ccactgga 608
||||||||
Sbjct: 801 ccactgga 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
