BAC Information

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BAC

Clone NameMSMg01-505G09
Chromosome12 (Build37)
Map Location 10,575,266 - 10,575,969
singlet/doubletsinglet
Overlap genenone
Upstream geneOsr1, LOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505G09.T7 (MSMg01no505_g09.b1)MSMg01-505G09.TJ (MSMg01no505_g09.g1)
ACCAG580048AG580049
length756762
length of high quality
(start - end)
710 (47 - 756)333 (330 - 662)
definitionCHROMAT_FILE: MSMg01no505_g09.b1 PHD_FILE: MSMg01no505_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:18 2005CHROMAT_FILE: MSMg01no505_g09.g1 PHD_FILE: MSMg01no505_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGTCGATAAXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGAGGATCCG
CGGAATTCTTATGTTCTGCTATGCTTATGTTCTTATTTTGGTTTGATCCT
TGTGTTTTATGTTTCTTTGTCTTATTATATAGAAGCCAGCATTACAAAAG
AACTGAATTCTAAGTTTGTCTCGTCTACTCTGTGTTCTCAGGAAACAGAG
ATTAAAACTTTCTTCTATGTATTTCTCTCAGGAAAAAAAAAACTCTAAAT
TTTACTCCTAAATGGAAATACAAACATATGAATATATTCTAGAGTTTTAC
GATACTGAGGCAATAATCAATTAATACTTCTTGTTCTTAGAGGTCAGCCT
TTAGTTTTTCTTCTTTCTCTACCTTTCCTCCCAGAATTAAAAGTGGCTAT
AGAGAAGTATATACAAGGTTTGTATGAAAGGCAATTACATCAGCTTTCTG
GTGTACAGAGCATTGTAAGATAATAAATCTATTTCTAAATAAATATTTCA
CATATTTTACATAAAACAAATTATCTCCCTAGATCAGTAATTTCCTTTTT
AAACTACAGTTAGTTGCAGGACATTCAAAATCTAGTCTGGTCAACTTCAA
TGGGCACTTCTATTTTGCACATTTATGTCGAAGAATATTTGCCATGGATT
TTTTTTTTCTTCATACAGAGATCACCCTGGAAGAAACCTATTCTACTTGT
TCAATTTCAATTGCTCGGCATCTGTCAAGTCTGTGGCCATGATCTATCTT
GTGTTT
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTCCAAGGAATTCTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAATACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTTCAACCACTCT
GGAAATCAGTCTGGCAGTTCCTCATAATATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACAC
TATGCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_g09.b1 MSMg01no505_g09.b1 CHROMAT_FILE:
MSMg01no505_g09.b1 PHD_FILE: MSMg01no505_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:18 2005
         (710 letters)



>mm_chr12_10575060_10576169
          Length = 1110

 Score = 1324 bits (685), Expect = 0.0
 Identities = 700/705 (99%), Gaps = 2/705 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttat-gttctgctatgcttatgttcttattttggtttgatccttgtgttttatg 65
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttatggtt-tgctatgcttatgttcttattttggtttgatccttgtgttttatg 265

                                                                       
Query: 66  tttctttgtcttattatatagaagccagcattacaaaagaactgaattctaagtttgtct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttctttgtcttattatatagaagccagcattacaaaagaactgaattctaagtttgtct 325

                                                                       
Query: 126 cgtctactctgtgttctcaggaaacagagattaaaactttcttctatgtatttctctcag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cgtctactctgtgttctcaggaaacagagattaaaactttcttctatgtatttctctcag 385

                                                                       
Query: 186 gaaaaaaaaaactctaaattttactcctaaatggaaatacaaacatatgaatatattcta 245
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaaaaaaaactcaaaattttactcctaaatggaaatacaaacatatgaatatattcta 445

                                                                       
Query: 246 gagttttacgatactgaggcaataatcaattaatacttcttgttcttagaggtcagcctt 305
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 gagttttacgatactgaggcaataatcaactaatacttcttgttcttagaggtcagcctt 505

                                                                       
Query: 306 tagtttttcttctttctctacctttcctcccagaattaaaagtggctatagagaagtata 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tagtttttcttctttctctacctttcctcccagaattaaaagtggctatagagaagtata 565

                                                                       
Query: 366 tacaaggtttgtatgaaaggcaattacatcagctttctggtgtacagagcattgtaagat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacaaggtttgtatgaaaggcaattacatcagctttctggtgtacagagcattgtaagat 625

                                                                       
Query: 426 aataaatctatttctaaataaatatttcacatattttacataaaacaaattatctcccta 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aataaatctatttctaaataaatatttcacatattttacataaaacaaattatctcccta 685

                                                                       
Query: 486 gatcagtaatttcctttttaaactacagttagttgcaggacattcaaaatctagtctggt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gatcagtaatttcctttttaaactacagttagttgcaggacattcaaaatctagtctggt 745

                                                                       
Query: 546 caacttcaatgggcacttctattttgcacatttatgtcgaagaatatttgccatggattt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 caacttcaatgggcacttctattttgcacatttatgtcgaagaatatttgccatggattt 805

                                                                       
Query: 606 tttttttcttcatacagagatcaccctggaagaaacctattctacttgttcaatttcaat 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tttttttcttcatacagagatcaccctggaagaaacctattctacttgttcaatttcaat 865

                                                        
Query: 666 tgctcggcatctgtcaagtctgtggccatgatctatcttgtgttt 710
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tgctcggcatctgtcaagtctgtggccatgatctatcttgtgttt 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)