Query= MSMg01no505_k01.b1 MSMg01no505_k01.b1 CHROMAT_FILE:
MSMg01no505_k01.b1 PHD_FILE: MSMg01no505_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:35 2005
(690 letters)
>mm_chr12_90122398_90123487
Length = 1090
Score = 1251 bits (647), Expect = 0.0
Identities = 677/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Plus
Query: 5 gaattccttgttgctgaacagcagtatggaagtgtaagccgaataaaccctttcctcccc 64
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 gaattccttggtgatgaacagcagtatggaagtgtaagccgaataaacccttccctcccc 263
Query: 65 aacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagacagccatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagacagccatc 323
Query: 125 aatgggaggagaagcccttggtctttcgaagatcacatgccccagtacaggggaatgcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgggaggagaagcccttggtctttcgaagatcacatgccccagtacaggggaatgcca 383
Query: 185 gggccaggaagcaggagcgggtgggttgggaagcagggcaggggggagggtataggggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggccaggaagcaggagcgggtgggttgggaagcagggcaggggggagggtataggggac 443
Query: 245 tttcaggatagcatttgaaatgtaaacgaagaaaatatttaataaaaaattgtttttgaa 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 444 tttcaggatagcatttgaaatgtaaacgaagaaaatatctaataaaaaattgtttttcaa 503
Query: 305 aaaaaaatccatgttcttttcatggtgtaatttatttaccacgaataagaaatgctgtgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaaaatccatgttcttttcatggtgtaatttatttaccacgaataagaaatgctgtgt 563
Query: 365 gattcaacctaacaccatataatgactcatatgaggtttgcttcaactttctatgtctgt 424
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 gattcaacctaacaccatataacaactcatatgaggtttgcttcaactttctatgtctgt 623
Query: 425 tccatttcatagtaggggacagatatcagccaacattttaagagactgataatctcaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccatttcatagtaggggacagatatcagccaacattttaagagactgataatctcaaat 683
Query: 485 cagggtgaaaattcagtattcagtaattaaactt-ttgtacttagctatttcttttatgt 543
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 684 cagggtgaaaattcagtattcagtaattaaacttcttctacttagctatttcttttatgt 743
Query: 544 atgtgaatgctaatattatataattaatatatttgcaaattgaatgataataaacaaatt 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 744 atgtgaatgctaatattatataattaatatatttgcaagttgaatgataataaacaaatt 803
Query: 604 tgcaagcagttattcctcttcttaaataaacgatactagtcgatttccaaacatcagcta 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgcaagcagttattcctcttcttaaataaacgatactagtcgatttccaaacatcagcta 863
Query: 664 ttttgtgttttgttatatttgaaacat 690
|||||||||||||||||||||||||||
Sbjct: 864 ttttgtgttttgttatatttgaaacat 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_k01.g1 MSMg01no505_k01.g1 CHROMAT_FILE:
MSMg01no505_k01.g1 PHD_FILE: MSMg01no505_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:35 2005
(651 letters)
>mm_chr12_90273586_90274635
Length = 1050
Score = 812 bits (420), Expect = 0.0
Identities = 456/470 (97%), Gaps = 5/470 (1%)
Strand = Plus / Minus
Query: 1 agatacaaatgcatcctcacaatggctcctcttttgcttgtgtgtgtaggagcatgtctt 60
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 469 agatacaaatgcatcctcacaacggctcctcttttgcttgtgtgtgcaggagcatgtctc 410
Query: 61 atttcatattaaagaataatgtagcctttccttcacaggaggttctcactggacagttca 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atttcatattaaagaatgatgtagcctttccttcacaggaggttctcactggacagttca 350
Query: 121 cccagccatttaatatgttagctattataattcatgaactaaaacagctcccatccccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cccagccatttaatatgttagctattataattcatgaactaaaacagctcccatccccca 290
Query: 181 ttacatctgtatctatggcaagctgcatttctgttaacttcagtatcctcttgtaaataa 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 289 ttacatctgtatctatggcaagctgtatttctgttaacttcagtatcctcttgtaaataa 230
Query: 241 tgaaagtgttactt----ctttcttttttctttcaattttttattagatattttcttcat 296
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgaaagtgttacttacttcttt-ttttttctttcaattttttattagatattttcttcat 171
Query: 297 ttatttcaaatgctatcctgaaaatcccctataccttccccccacactgctcccctaccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttatttcaaatgctatcctgaaaatcccctataccttccccccacactgctcccctaccc 111
Query: 357 accgacccccacttcttggtcctggtgttcccctgtactggggcatataaagttaggaag 416
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 110 accgactcccacttcttggccctggcgttcccctgtactggggcatataaagttaggaag 51
Query: 417 atcaaggggcctctcttaccaatgatggcagactaggccatcttctgcta 466
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 50 atcaaggggcctctcttcccaatgatggcagactaggccatcttctgcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space: 666640
Effective search space used: 666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
