BAC Information

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BAC

Clone NameMSMg01-505M22
Chromosome12 (Build37)
Map Location 52,767,808 - 52,795,849
singlet/doubletdoublet
Overlap geneStrn3, Ap4s1
Upstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch
Downstream geneHectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505M22.T7 (MSMg01no505_m22.b1)MSMg01-505M22.TJ (MSMg01no505_m22.g1)
ACCAG580354AG580355
length779774
length of high quality
(start - end)		562 (52 - 613)547 (84 - 630)
definitionCHROMAT_FILE: MSMg01no505_m22.b1 PHD_FILE: MSMg01no505_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:48 2005CHROMAT_FILE: MSMg01no505_m22.g1 PHD_FILE: MSMg01no505_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,767,808 - 52,768,365)(52,795,474 - 52,795,849)
sequence
NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTCACCATTCAACATCTGATTGCCAAAGAACTATTTAC
TATTTGCTGATGTTTGGTGACAACCACTAGAGGTCACCAGCATAAAACTC
TCAATATTGATTCACGCAGGATCAGTCTAAATGATTCACAATTACTTGTT
TCCCTTTACTAAAACAAGATTCAGTTTAAATTCAGGTGAACCACTGACAT
CTAGTGAATGCTATTCTCTCTCTCCACACACACACTGTATACTTGCATAT
ATATTATGGATATCATTCAAGGGCTAAGAAAAATGGTTCAGTGGTTTAGA
GAGCTTGCCATGAAGCAATAAAAACTAGAGTTTGGATCTAACACGCATGT
TACAAGTCAGGCAGCTTGTGCATGCCTGTAATCCCAGCTCCAAGCGAAGC
AGAGACAGGAGTATTGGGACTTCCTGGCTTCCAGCCTACCAGAGAAACCC
AATTTCAGAAGAGACCTCAAAGGTCAGAGAGATAGATGAGGACAGCTACA
TCCTCTTCTGGCCTGTGAGTGTGCATACACACAGGTACATACACATACAA
TAAATAATCATACAAAAGATTCAAAACTTANGACGGTTGTGGTAGTATAT
ATCAGTAAGATATGCTGAAGAAGAAGCATAGGACCACCGGGNTGAGGCCA
AGCTGGTTTAANACACNCACACACACACACACACACACACACACACACAC
ACACACACACACACAGAGAGAGAGAGAGA

NNNNAACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTATACTTTGGCT
TTCATAATTCATGTAAATTAAATACGACAAGTCCAGCTGAATAAGCATAT
TGGTTCAAATATTACTTGTAAGGATAGAAAACAAAGTAGTGCCCTAAAAA
CTAAGCTGATCAAAAATATAGGCATTGTTTTTTTAACCAAATCAAACCAA
ACAACAACAAAACAAGGTCTCACTGTGTACTTTAGTCTAGCCTAGAATTC
TTCACATGACTCAGGGTTCAGACTCTCATCAATAATTCTGGCTCAGCCTC
CCCAGTGCAGAAAGTACCGAGCAGCCATACATAGACTTTCATGAAGATCA
TCATGAACTGAGCAAGCTGAAGTCCATTTGCAATCCCAGCACTTGGGTGG
CAGAAACAGGAGAATCTCATGCTCAAGGGCAGCACACCATTTTACCCTCC
ACCTACCCCAAATCATTCTGAAAGAAGGAGAATCTAGGCAGGAGCAGGGA
GGAGTGAGAGGTGAGAGGACAGGATAAATAGGAAGTTTCAAAGGGGACTG
AAGAGAGGAAATGACTCAGCAAGGGGTCAGAGAGAGAATTCCAGTTAGGC
AAGCTGAACTGTTAGAGTGTAACTGGGGAGAATTTGTTATCTAAAAGTTC
TAGAGACTCATTCCAGTGTTCTCAAGAGCAGTGGGCAGGAAGCACAATGT
TAAACAGGGTAAAACATCATCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_m22.b1 MSMg01no505_m22.b1 CHROMAT_FILE:
MSMg01no505_m22.b1 PHD_FILE: MSMg01no505_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:48 2005
         (562 letters)



>mm_chr12_52767604_52768565
          Length = 962

 Score = 1056 bits (546), Expect = 0.0
 Identities = 555/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcaccattcaacatctgattgccaaagaactatttactatttgctgatgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcaccattcaacatctgattgccaaagaactatttactatttgctgatgttt 264

                                                                       
Query: 65  ggtgacaaccactagaggtcaccagcataaaactctcaatattgattcacgcaggatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgacaaccactagaggtcaccagcataaaactctcaatattgattcacgcaggatcag 324

                                                                       
Query: 125 tctaaatgattcacaattacttgtttccctttactaaaacaagattcagtttaaattcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctaaatgattcacaattacttgtttccctttactaaaacaagattcagtttaaattcag 384

                                                                       
Query: 185 gtgaaccactgacatctagtgaatgctattctctctctccacacacacactgtatacttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgaaccactgacatctagtgaatgctattctctctctccacacacacactgtatacttg 444

                                                                       
Query: 245 catatatattatggatatcattcaagggctaagaaaaatggttcagtggtttagagagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 catatatattatggatatcattcaagggctaagaaaaatggttcagtggtttagagaact 504

                                                                       
Query: 305 tgccatgaagcaataaaaactagagtttggatctaacacgcatgttacaagtcaggcagc 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tgccatgaagcaataaaaactagagtttggatctaacatgcatgttacaagtcaggcagc 564

                                                                       
Query: 365 ttgtgcatgcctgtaatcccagctccaagcgaagcagagacaggagtattgggacttcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtgcatgcctgtaatcccagctccaagcgaagcagagacaggagtattgggacttcct 624

                                                                       
Query: 425 ggcttccagcctaccagagaaacccaatttcagaagagacctcaaaggtcagagagatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcttccagcctaccagagaaacccaatttcagaagagacctcaaaggtcagagagatag 684

                                                                       
Query: 485 atgaggacagctacatcctcttctggcctgtgagtgtgcatacacacaggtacatacaca 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgaggacagctacatcctcttctggcctgtgagtgtgcatacacacaggtacatacaca 744

                             
Query: 545 tacaataaataatcatac 562
           ||||||||||||||||||
Sbjct: 745 tacaataaataatcatac 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_m22.g1 MSMg01no505_m22.g1 CHROMAT_FILE:
MSMg01no505_m22.g1 PHD_FILE: MSMg01no505_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:48 2005
         (547 letters)



>mm_chr12_52795474_52796420
          Length = 947

 Score =  712 bits (368), Expect = 0.0
 Identities = 374/376 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggtatactttggctttcataattcatgtaaattaaatacgacaagtccagctgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 376 tttggtatactttggctttcataattcatgtaaattaaatacgacaagtccagctgagta 317

                                                                       
Query: 61  agcatattggttcaaatattacttgtaaggatagaaaacaaagtagtgccctaaaaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcatattggttcaaatattacttgtaaggatagaaaacaaagtagtgccctaaaaacta 257

                                                                       
Query: 121 agctgatcaaaaatataggcattgtttttttaaccaaatcaaaccaaacaacaacaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agctgatcaaaaatataggcattgtttttttaaccaaatcaaaccaaacaacaacaaaac 197

                                                                       
Query: 181 aaggtctcactgtgtactttagtctagcctagaattcttcacatgactcagggttcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaggtctcactgtgtactttagtctagcctagaattcttcacatgactcagggttcagac 137

                                                                       
Query: 241 tctcatcaataattctggctcagcctccccagtgcagaaagtaccgagcagccatacata 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tctcagcaataattctggctcagcctccccagtgcagaaagtaccgagcagccatacata 77

                                                                       
Query: 301 gactttcatgaagatcatcatgaactgagcaagctgaagtccatttgcaatcccagcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gactttcatgaagatcatcatgaactgagcaagctgaagtccatttgcaatcccagcact 17

                           
Query: 361 tgggtggcagaaacag 376
           ||||||||||||||||
Sbjct: 16  tgggtggcagaaacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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