BAC Information

Click to search

BAC

Clone NameMSMg01-505N05
Chromosome12 (Build37)
Map Location 6,111,517 - 6,111,865
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098
Downstream geneLOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505N05.T7 (MSMg01no505_n05.b1)MSMg01-505N05.TJ (MSMg01no505_n05.g1)
ACCAG580368AG580369
length759763
length of high quality
(start - end)
710 (50 - 759)647 (79 - 725)
definitionCHROMAT_FILE: MSMg01no505_n05.b1 PHD_FILE: MSMg01no505_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:49 2005CHROMAT_FILE: MSMg01no505_n05.g1 PHD_FILE: MSMg01no505_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTTTTATTGTTATTTTCCTTTTTATATCTTCCTAAAAGCA
TGAAAGATTTTTTTTTATTCTGGCTTCATCCAATTACTTTCCAGAGAGTT
GCTTATCCATGGGTTTCATGCGTTGTTTTCTAGGTTACCATGAATGATTT
GGCATAGCATATTTCCTATGTCATCCCTGTAGCCTGTGGTATTCATTTTT
TACCAACTCAGTGGTTGCCTTTTGAGGTATTGTCATCTAGCTCAGGTTTT
TGTTATTTCAGACTCTTAATTCCAGGTATTAAGTCTAAATTGTTATAGCA
AGATGTTCTATCAAGATATATGTTCATAAAAGAAGATTCACTCTCATAAA
CCTTTGTCGAGCGCGCCCCCAACTCGCCAGCAAGAACGACGCCACAGCAG
GATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTTTATATCTC
CCCTGTTTATATCTCTCCCTTGTTTATATCTCCCCTGTTTGTATCTCTCC
CTCGTTTATATCTCCCAATAATAACAATCCTCTCTCGAATAATAATCCTC
CCTCTAACCCGGGCCTCTCACTCTTATATACTCTCAGTTCCCATCCACGC
ACAGCAGGCCACGCCACCTCACCAGGCACGCAGCTTCAGCTAATCAGGGC
AGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGAATCCTGGTACACC
TGCGCAGCN
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGACCACTGGGTGGCTGTT
GCATGCCACAGACGAACCTCACTTGGGTCCTTGATCCACAGGCGAAACTC
TGGTTCCGGTTACAGGTGGGCAAAGTGTTGGTGAGAAGAAGGGATGACAA
AAGTGACACAAGGGAGTGTAGATATGAATGTAATTTGTCAAATCAAGCAT
CAAACATTTTTTACAGAAGAAAATAGGGAAGTTAGGTGACCCACCGGCAA
GGTATGATGAGGTTACTGAATTCTTACACAAAACAGAGGAATGTAAACAT
GGAAGGACTGGCAGGAACCAACTAGGATAAAATTCAATGTTAATAACTGG
GATCAAAAGCAGCTTCACCTAAGGTCCACTTAAAAGCCAGGGGCAAGGGC
TTCCTGCCCTTGGCATAGTTCCTATTCTAGTCTATTGTATAGTCCACCTT
TCCCCTAGGCCATGTATATGAGTGTAACTCAGCTATCTATAGTTCTATCT
ACTCTGGTTCCTCCTTAGATTCCAAACTTCCTTCTTCCTAGATAATGGTA
AATTCCTGAGTAGAGCAGTGACTTAGCTATCCATGCCCAGGGTTGGCTCA
AGGACTGCCTAGAATCTAACTTAGCTATATGTCAAATAGAGCCACTTATA
ATAAAGCAATATTAAGGGAAAGCACACAGATCCATTTACCAACTAAAGCA
AGGACATTGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_n05.b1 MSMg01no505_n05.b1 CHROMAT_FILE:
MSMg01no505_n05.b1 PHD_FILE: MSMg01no505_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:49 2005
         (710 letters)



>mm_chr12_6111313_6112421
          Length = 1109

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttttattgttattttcctttttatatcttcctaaaagcatgaaagatttttt 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaattctcttccattgttattttcctttttatatcttcctaaaagcatgaaagatttttt 494

                                                                       
Query: 65  tttattctggcttcatccaattactttccagagagttgcttatccatgggtttcatgcgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttattctggcttcatccaattactttccagagagttgcttatccatgggtttcatgcgt 434

                                                                       
Query: 125 tgttttctaggttaccatgaatgatttggcatagcatatttcctatgtcatccctgtagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttttctaggttaccatgaatgatttggcatagcatatttcctatgtcatccctgtagc 374

                                                                       
Query: 185 ctgtggtattcattttttaccaactcagtggttgccttttgaggtattgtcatctagctc 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 373 ctgtggtattcattttttaccaactcagtggttgcc-tttgaggtattgtcatctagctc 315

                                                                       
Query: 245 aggtttttgttatttcagactcttaattccaggtattaagtctaaattgttatagcaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aggtttttgttatttcagactcttaattccaggtattaagtctaaattgttatagcaaga 255

                                                             
Query: 305 tgttctatcaagatatatgttcataaaagaagattcactctcataaacct 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgttctatcaagatatatgttcataaaagaagattcactctcataaacct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1109
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1099
Effective search space:   769300
Effective search space used:   769300
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)