Query= MSMg01no506_k06.b1 MSMg01no506_k06.b1 CHROMAT_FILE:
MSMg01no506_k06.b1 PHD_FILE: MSMg01no506_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:55 2005
(695 letters)
>mm_chr12_79121535_79122629
Length = 1095
Score = 1274 bits (659), Expect = 0.0
Identities = 675/681 (99%), Gaps = 2/681 (0%)
Strand = Plus / Plus
Query: 17 gaattcatttgcattatctattactggaaatttcttgacaagtcgaccccagcagcaata 76
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 215 gaattcatttgcatgatatattactggaaatttcttgacaagtcgaccccagcagcacta 274
Query: 77 gatgtaatgtcattaagtaaattattagattatagatccaaaagccagagagccctgaca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gatgtaatgtcattaagtaaattattagattatagatccaaaagccagagagccctgaca 334
Query: 137 cttgagaaaacctgaatttttttataagtcaaattgtgttgaagccagaccttcggtatt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cttgagaaaacctgaatttttttataagtcaaattgtgttgaagccagaccttcggtatt 394
Query: 197 tcaggctatgactttatttgtaagtaactctttgaagatgataagatcaagttaatatgg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcaggctatgactttatttgtaagtaactctttgaagatgataagatcaagttaatatgg 454
Query: 257 catcatcagagttgttcctaatccaaggtaatagagtccatataaaaagaggaaatgcag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 catcatcagagttgttcctaatccaaggtaatagagtccatataaaaagaggaaatgcag 514
Query: 317 acaaagacacaaatgcacaaagggaaattatcacatgaacataaactgatgagttttttt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acaaagacacaaatgcacaaagggaaattatcacatgaacataaactgatgagttttttt 574
Query: 377 ttt--gtaagctaggaaataatttttaaacatgctaacaaaccacaagaaactgtaaggt 434
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttttgtaagctaggaaataatttttaaacatgctaacaaaccacaagaaactgtaaggt 634
Query: 435 aggcatgcaacatatctccacagcactctgagggaataaactccatcagcacttttgtct 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aggcatgcaacatatctccacagcactctgagggaataaactccatcagcacttttgtct 694
Query: 495 tagatgtctaccctctcaaagtgtgaggcattactgctaaactgctgcctaaaccactcg 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tagatgtctaccctctcaaagtgtgaggcattactgctaaactgctgcctaaaccactcg 754
Query: 555 gtgtgaggtcctttctgtagcagcctcaagaaactactgccctcacactgaagtcctggg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gtgtgaggtcctttctgtagcagcctcaagaaactactgccctcacactgaagtcctggg 814
Query: 615 ccagtatctactgacttaatctgcaatggctttacccaacattttcagtagtgaatcttt 674
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 815 ccagtatctactgacttaatctgcaacggctttacccaacattttcagtagtgaatcttt 874
Query: 675 ggtaaagtagctccaagcaga 695
|||||||||||||||||||||
Sbjct: 875 ggtaaagtagctccaagcaga 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_k06.g1 MSMg01no506_k06.g1 CHROMAT_FILE:
MSMg01no506_k06.g1 PHD_FILE: MSMg01no506_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:55 2005
(660 letters)
>mm_chr12_79140150_79141208
Length = 1059
Score = 1259 bits (651), Expect = 0.0
Identities = 657/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Minus
Query: 1 cttctggggaaatattgcagctgccatacaggagaatgcctttttcccgtgatacatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cttctggggaaatattgcagctgccatacaggagaatgcctttttcccgtgatacatgga 740
Query: 61 acctgatacaattgtttcagttttaatatggcaagtttagaggtgagagaacaaaaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acctgatacaattgtttcagttttaatatggcaagtttagaggtgagagaacaaaaagac 680
Query: 121 atgtaatgtcatacttttataataggaaaagacacatcaattgaattgaaacttttttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atgtaatgtcatacttttataataggaaaagacacatcaattgaattgaaacttttttta 620
Query: 181 tatgcatttaaagtagagagggcagaaaacctagtctaaaactccttagataactcctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tatgcatttaaagtagagagggcagaaaacctagtctaaaactccttagataactcctgc 560
Query: 241 ttctcaggatttctatatctatgtttaaaaggagatatatgatctgagagttcacagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctcaggatttctatatctatgtttaaaaggagatatatgatctgagagttcacagaat 500
Query: 301 ttcacaataaaaccatgtcctgaaaaatgtatgtccattctgtgccctcaacccctctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttcacaataaaaccatgtcctgaaaaatgtatgtccattctgtgccctcaacccctctgg 440
Query: 361 tgtccttctctagattgtagagaactcttgtttccgtccccaggggatgagatgcactaa 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtccttctctagattgtagagaacccttgtttccgtccccaggggatgagatgcactaa 380
Query: 421 gataaatattactctttgatagcctagaaatgtagcttcttgctgttgctcttcacagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gataaatattactctttgatagcctagaaatgtagcttcttgctgttgctcttcacagaa 320
Query: 481 tatgtgatctattaaccaacctggaaatcactttcttgttcctgagaaagaatttctttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatgtgatctattaaccaacctggaaatcactttcttgttcctgagaaagaatttctttc 260
Query: 541 tatacgactctcacctggggggagaatgaagaaaaaggaatagacttgtagtctgatttg 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatacgactctcacct-gggggagaatgaagaaaaaggaatagacttgtagtctgatttg 201
Query: 601 ttttctgttgctgtgagtggccaccctgatcaaaagcaactgagacagttccaggtcag 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttttctgttgctgtgagtggccaccctgatcaaaagcaactgagacagttccaggtcag 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space: 681850
Effective search space used: 681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
