Query= MSMg01no506_l03.b1 MSMg01no506_l03.b1 CHROMAT_FILE:
MSMg01no506_l03.b1 PHD_FILE: MSMg01no506_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:59 2005
(623 letters)
>mm_chr12_86983858_86984883
Length = 1026
Score = 1067 bits (552), Expect = 0.0
Identities = 603/624 (96%), Gaps = 13/624 (2%)
Strand = Plus / Plus
Query: 5 gaattcactgatgttctgtttatgcccaaggaaaactggaggtaacctaattccctgtgg 64
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatccactgatgccctgtttatgcccaaggaaaactggaggtaacctaattccctgtgg 264
Query: 65 aggtaagacaaacaaatgatagtgtttcacaaaattgagtgttagcccttagaaatgagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtaagacaaacaaatgatagtgtttcacaaaattgagtgttagcccttagaaatgagc 324
Query: 125 tgtccatcaatatagatgaatctcagaaacagtgggagagtgaactacacatggatgtca 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtccatcattatagatgaatctcagaaacagtgggagagtgaactacacatggatgtca 384
Query: 185 cgccgggaggtttttttttt-caacacgtaaaatggtacgttcgttattaaggacacaca 243
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 tgccgggaggtttttttttttcaacacgtaaaatggtacattcgttattaaggacacaca 444
Query: 244 gagatccgggagcaggcagaagagcaaatgcaagaatgctataaataccaaaatcagtga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagatccgggagcaggcagaagagcaaatgcaagaatgctataaataccaaaatcagtga 504
Query: 304 cagggactgactgtgggggtgggcagggaccagcagtggattctacaaggataagtagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagggactgactgtgggggtgggcagggaccagcagtggattctacaaggataagtagga 564
Query: 364 cacgggtttcaactgtacctgtatgtgtgactgttcctttcccttttagtatagtcatta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacgggtttcaactgtacctgtatgtgtgactgttcctttcccttttagtatagtcatta 624
Query: 424 aaagtagagtgaccccagacttgtcagaggcgggctgtgtgctcctaggcaaggtttata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagtagagtgaccccagacttgtcagaggcgggctgtgtgctcctaggcaaggtttata 684
Query: 484 ttctgcctttgtctggttggtgtttcctgataaaagag--caaatct-caatgcaattag 540
|||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||
Sbjct: 685 ttctgcctttgtctggttggtgtttcctgataaaagagagcaaat-tgcgatgcaattag 743
Query: 541 aagatttacggttgttggttttttgggttttttt-tttgtttgtttggtttttttttagg 599
|||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 744 aagatttatggttgttggttttttgggtttttttgtttgtttgtttg------ttttagg 797
Query: 600 atttttttttcctgtcttttgttt 623
||||||||| ||||||||||||||
Sbjct: 798 atttttttt-cctgtcttttgttt 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1026
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1016
Effective search space: 622808
Effective search space used: 622808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_l03.g1 MSMg01no506_l03.g1 CHROMAT_FILE:
MSMg01no506_l03.g1 PHD_FILE: MSMg01no506_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:59 2005
(657 letters)
>mm_chr12_87113662_87114718
Length = 1057
Score = 667 bits (345), Expect = 0.0
Identities = 348/349 (99%)
Strand = Plus / Minus
Query: 309 acttagttctttggatgtgatcccttgccagagcagccatgttgctggattaaattgcct 368
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1057 acttagttctttggatgtgatcccttgccagtgcagccatgttgctggattaaattgcct 998
Query: 369 ctgtaatatttacattacagttcacaacagtagaaaaattatagttatgaagtagcagca 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 ctgtaatatttacattacagttcacaacagtagaaaaattatagttatgaagtagcagca 938
Query: 429 aaataatttgtagttgtgggtcaccacaacatggggaactgaattaaaaggtcacagcac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aaataatttgtagttgtgggtcaccacaacatggggaactgaattaaaaggtcacagcac 878
Query: 489 gaagaaggttgagaaccactaggcttgagaaatgtcggggtggggggaagcaactgtgga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaagaaggttgagaaccactaggcttgagaaatgtcggggtggggggaagcaactgtgga 818
Query: 549 aatgaaaatagcccacggtcattgagtctcttgggagacaataatgatgatagtgagcca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aatgaaaatagcccacggtcattgagtctcttgggagacaataatgatgatagtgagcca 758
Query: 609 tggcaaccatgtggcaggtgctgaattaatccccattccaaagctggtt 657
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tggcaaccatgtggcaggtgctgaattaatccccattccaaagctggtt 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
