Query= MSMg01no506_o04.b1 MSMg01no506_o04.b1 CHROMAT_FILE:
MSMg01no506_o04.b1 PHD_FILE: MSMg01no506_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:13 2005
(577 letters)
>mm_chr12_17182605_17183575
Length = 971
Score = 1065 bits (551), Expect = 0.0
Identities = 568/577 (98%), Gaps = 6/577 (1%)
Strand = Plus / Minus
Query: 1 gacccgctccggcaaagccactccaagttagctctctatacagcccggatcgcgcagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gacccgctccggcaaagccactccaagttagctctctatacagcccggatcgcgcagctc 712
Query: 61 tcgggctgacccacctctgccgctcaaccggggaaggaggacgctgcctacgagaagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tcgggctgacccacctctgccgctcaaccggggaaggaggacgctgcctacgagaagaac 652
Query: 121 caagtcctgtcccggaccgagctgaaggagcccgtgggtgagtgtccccaacaccggagg 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 651 caagtcctgtcccggaccgagctgaaggagcccgtgggtgagtgt------caccggagg 598
Query: 181 ccaccggccgcagagtcccccgccagcgctcctggatgcccgcgtgcagccccgccactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ccaccggccgcagagtcccccgccagcgctcctggatgcccgcgtgcagccccgccactg 538
Query: 241 ggtgcatggctcccttgcggcgcgccccagcctgcctccgcccgctgtgagtgccttttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggtgcatggctcccttgcggcgcgccccagcctgcctccgcccgctgtgagtgccttttc 478
Query: 301 cggcaggtggttgttgtcccctagggcctcgcattggcagcggctgcggcagggctcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cggcaggtggttgttgtcccctagggcctcgcattggcagcggctgcggcagggctcatg 418
Query: 361 gaaccggggcttgcaagcgaacccgcggggagcatggacgcatctgccgagcaaagcctc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 417 gaaccggggcttgcaagcgaacccgcggggagcatggacgcatctgctgagcaaagcctc 358
Query: 421 ccggagccaggcagccaggactccgtggcatgcgaagacattgagatcgtggtaaatgtg 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 357 ccggagccaggcagccaggactccgtggcaggcgaagacattgagatcgtggtaaatgtg 298
Query: 481 gggggcgtgcggcaggtgctctacggagacctgctcagccagtaccctgagacccggttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gggggcgtgcggcaggtgctctacggagacctgctcagccagtaccctgagacccggttg 238
Query: 541 gcagagctcatcaactgtttggcgcggggctacgaca 577
|||||||||||||||||||||||| ||||||||||||
Sbjct: 237 gcagagctcatcaactgtttggcggggggctacgaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 971
Length adjustment: 10
Effective length of query: 567
Effective length of database: 961
Effective search space: 544887
Effective search space used: 544887
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_o04.g1 MSMg01no506_o04.g1 CHROMAT_FILE:
MSMg01no506_o04.g1 PHD_FILE: MSMg01no506_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:14 2005
(635 letters)
>mm_chr12_17045363_17046397
Length = 1035
Score = 1201 bits (621), Expect = 0.0
Identities = 634/643 (98%), Gaps = 8/643 (1%)
Strand = Plus / Plus
Query: 1 taacaatccaaagaagagctggagaggtaacacaagagaaataaaacaaacctggtgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 taacaatccaaagaagagctggagaggtaacacaagagaaataaaacaaacctggtgcca 252
Query: 61 gcattagtctgacggctgtgtctacagatcccatttcaggggtacatcatgcaaggggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcattagtctgacggctgtgtctacagatcccatttcaggggtacatcatgcaaggggag 312
Query: 121 gtaccattttttaaggtatggagcctgacatagtgactcaaacttgtaattccagccctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtaccattttttaaggtatggagcctgacatagtgactcaaacttgtaattccagccctg 372
Query: 181 ggtagctaaaggccaggaggatcacatgaattctaggctagcctggattacacaagttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggtagctaaaggccaggaggatcacatgaattctaggctagcctggattacacaagttgg 432
Query: 241 ctatatgctagcctgaggtacaagtgtgagaacctctcacaaagtcaaggcaatgtcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatatgctagcctgaggtacaagtgtgagaacctctcacaaagtcaaggcaatgtcagt 492
Query: 301 gagatggttcaacaggtaaagacccttgtgcaagactggtaacctgaatggaacccccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagatggttcaacaggtaaagacccttgtgcaagactggtaacctgaatggaacccccag 552
Query: 361 gatccacaaagatgtgggaggagagaactcactccgtagagttgtcctgtgacctctgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gatccacaaagatgtgggaggagagaactcactccgtagagttgtcctgtgacctctgac 612
Query: 421 cctgtgatgtggtatacacacacctgcacacacatataactaactaactaactaactaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cctgtgatgtggtatacacacacctgcacacacatataactaactaactaactaactaac 672
Query: 481 taactaaataactaaataaataaataaataaataaat--------gtaactcagaaagcc 532
||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 673 taactaactaactaaataaataaataaataaataaataaataaatgtaactcagaaagcc 732
Query: 533 tataacttctttagaacaaaaggaaaaaatagagatctttcaacacaacacttcccatcc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tataacttctttagaacaaaaggaaaaaatagagatctttcaacacaacacttcccatcc 792
Query: 593 tttgaatactttatgtaagctgcatagagcaagcaatagcctt 635
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tttgaatactttatgtaagctgcatagagcaagcaatagcctt 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
