BAC Information

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BAC

Clone NameMSMg01-507B11
Chromosome12 (Build37)
Map Location 99,814,767 - 99,815,424
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507B11.T7 (MSMg01no507_b11.b1)MSMg01-507B11.TJ (MSMg01no507_b11.g1)
ACCAG581325AG581326
length686786
length of high quality
(start - end)		662 (10 - 671)529 (77 - 605)
definitionCHROMAT_FILE: MSMg01no507_b11.b1 PHD_FILE: MSMg01no507_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:30 2005CHROMAT_FILE: MSMg01no507_b11.g1 PHD_FILE: MSMg01no507_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAGAGGATCCGCGGAATTCTTTACCCAATCCCACAGAAAGGAGACTCT
CAGAAGCACTTTCATGCCTCTCTCTACCCTTTCCTCCCTGCATCTCTATT
GGAATCAGCAAAAAATCAACAGAGAAGCACATCTCTCCAAAAACCCCTTT
AGGTGATGAGGCAAAACAGCTTATTTAATGCAACTTCACCTTCTCTCGCC
TCTCATTCTCCATCAGCTTCCTCCATCTCTCTGAGGATGCTCTCCCTGGC
CTCCTTTTTACAGAGTCTGCTTAGGGGAATAAAAACCACCCCCAGGATCA
TGGAGGGGAGATGGAGACCCCAAGTTTATCTGACCCCAAGACCCATCATT
TCTATACCAAAACCTTGGGGTACAGGACCATGAATCTGACCAGATGTGTT
CTTTTGAATAATGATGATCCAAATATTGGGTTATCCAAACGTCAGCCCCT
TTCTATTTGCATAAGGAACTGGGCTATTGTGCAGTCGAGGGGGTCAACAT
TAAGGGATTTTATCACTGCCCAAAGCACCACTCCTTGGAACAAACTGCAG
TCTTCTGATGCATTAGCATTCAGCCAATCAACAAACACGGAGCATCCCCC
ATGTCCAAAGTAAGTTGCAGGTCTTCCTTAAAAGTGATTTTGACCTCTAG
GTGATAGATGACCTCCCCACCCCAGTAGCAGAAAGA

CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAAAGATCCTTCTGCCTCTGCCT
CCCAAGTGCTGGAATTAAAGGAGTGTGCCACCACCATTTGGGACTTTTTA
CATTTTTAAAAGAAATCTTTATTTTATTTTCAATCTCTTTTCCCCACTCC
CTTTCTTTCTCTCTGCATGTTAGATGTCCTATTCTTCTGCCTTAATCCTT
TGAATAGGGTCTCTTACTGAACCAAGAGCTAGGTCCTCAGCCATGAAGTT
CCAGAGACCCTTCTGCCTCTGCCTCTATAACACTCAAGTCACAGCAGCAT
ATAGGCAGGCCAGCTTTTTATTTGGGTTCTGGTGATTTAAACTTGGGTCC
TCATCATTAAACAGTATGGTGATTTGAATATGCTTGGACAAGGGAGTAGC
ATTATTAGGAGGTGTGGCCTAGTTGAAGTAGGTGTGGCCTTGTTGGAGGA
AGTGTGTCACTGTGGAGGTGGGCTTTGAGACCCTCCTCCTAGTGGCCTTC
ACATGAAGATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGAC
ACTGCCAGTAAGATAATGGACTGAACCTCTGGACCCAAAAGCCAGCTCCA
ATTACATGTTGTCCTCATAAGAAGTGCCTTGGTCATGGTGTCTGTTCACA
GGAGTAAAACCCCTACTAGACACACAGCAAGAATACTTGCCCCATGGGGC
ATGTCCCTCTGATTTGGGAGTCAGATAGTATGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_b11.b1 MSMg01no507_b11.b1 CHROMAT_FILE:
MSMg01no507_b11.b1 PHD_FILE: MSMg01no507_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:30 2005
         (662 letters)



>mm_chr12_99814562_99815624
          Length = 1063

 Score = 1249 bits (646), Expect = 0.0
 Identities = 655/658 (99%), Gaps = 1/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctttacccaatcccacagaaaggagactctcagaagcactttcatgcctctctc 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctttacccaagcccacagaaaggagactctcagaagcactttcatgcctctctc 265

                                                                       
Query: 66  taccctttcctccctgcatctctattggaatcagcaaaaaatcaacagagaagcacatct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taccctttcctccctgcatctctattggaatcagcaaaaaatcaacagagaagcacatct 325

                                                                       
Query: 126 ctccaaaaacccctttaggtgatgaggcaaaacagcttatttaatgcaacttcaccttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctccaaaaacccctttaggtgatgaggcaaaacagcttatttaatgcaacttcaccttct 385

                                                                       
Query: 186 ctcgcctctcattctccatcagcttcctccatctctctgaggatgctctccctggcctcc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcgcctctcattctccatcagcttcctccatctctctgaggatgctctccctggcctcc 445

                                                                       
Query: 246 tttttacagagtctgcttaggggaataaaaaccacccccaggatcatggaggggagatgg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttttacagagtctgcttaggggaataaaaaccacccccaggatcatggaggggagatgg 505

                                                                       
Query: 306 agaccccaagtttatctgaccccaagacccatcatttctataccaaaaccttggggtaca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaccccaagtttatctgaccccaagacccatcatttctataccaaaaccttggggtaca 565

                                                                       
Query: 366 ggaccatgaatctgaccagatgtgttcttttgaataatgatgatccaaatattgggttat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaccatgaatctgaccagatgtgttcttttgaataatgatgatccaaatattgggttat 625

                                                                       
Query: 426 ccaaacgtcagcccctttctatttgcataaggaactgggctattgtgcagtcgagggggt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccaaacgtcagcccctttctatttgcataaggaactgggctattgtgcagtcgagggggt 685

                                                                       
Query: 486 caacattaagggattttatcactgcccaaagcaccactccttggaacaaactgcagtctt 545
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 686 caacattaagggattttatcactgcccaaagaaccactccttggaacaaactgcagtctt 745

                                                                       
Query: 546 ctgatgcattagcattcagccaatcaacaaacacggagcat-cccccatgtccaaagtaa 604
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 746 ctgatgcattagcattcagccaatcaacaaacacggagcattcccccatgtccaaagtaa 805

                                                                     
Query: 605 gttgcaggtcttccttaaaagtgattttgacctctaggtgatagatgacctccccacc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gttgcaggtcttccttaaaagtgattttgacctctaggtgatagatgacctccccacc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space:   686556
Effective search space used:   686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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