BAC Information

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BAC

Clone NameMSMg01-507M11
Chromosome12 (Build37)
Map Location 98,950,125 - 98,950,441
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732
Downstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507M11.T7 (MSMg01no507_m11.b1)MSMg01-507M11.TJ (MSMg01no507_m11.g1)
ACCAG581847AG581848
length1,518786
length of high quality
(start - end)
---325 (79 - 403)
definitionCHROMAT_FILE: MSMg01no507_m11.b1 PHD_FILE: MSMg01no507_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:26 2005CHROMAT_FILE: MSMg01no507_m11.g1 PHD_FILE: MSMg01no507_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTCTGATTTTAGGAGTGCGTCNACTTCGATATAACTTTACTCTTCTCT
TCCCCTCATATACAGACGGGACGGANGAAATATAANATGNAGTGTCTCCA
CTACACTCATACGATGACACAAGGTATGACTAGAATGAAGCTGTTCGGTA
GGTACGCCGANTACTATCAGAACGAGACATATCTCAACCTGCTCTATGTT
CTCTACGACTTATATTCGTTAATCACTGTATCTCCGTTCAATATCATACG
CTATNCAATAAACACTTCTATCACTATACAAACATCGCATCACAACCAAT
ACACACCCACTCCTGTCGCTTCTCTACACTAGTACGAATAATAGATATAT
CATATAAATTATGAGCGTAGTACGTCTTCATTATTCCATATACTCATCTT
TTATCTACTTTCTTTACTCGTACTTATATTTCTACGTCTATCTTGCTTCC
TATCCTCCGTCTGCTCATATACGCCTATCGCTGTTCTCGCGCAGCTCTCG
ACTGTACGCGTGTCTACTTTATCAGCGCTATCCACTGCTATTAGCATCAT
CTCTCCTCAATATCACATCCGCAACTACTNATATCACATACTACTACCTC
TAACATCCAACTCTCTCTATTATATAAATAATCTCTCTCCACTACTTTAT
ATAACCACACCTCCTTCTCCTCGCCACGTNATGTCATCTTCTCATTTTAA
CTATCTCGCGCACATACATCTCAGCATTATCCACATACGCTCACTCTACC
ACGTACCGCAGTGCGACTATCTGAACTACTCTCACATAGACTGTCACTGT
TCTCGTGTAATATCCTCGTATATGACTGGCGTGCTCTGACCGTACTCTTG
CGTATCGATCATCGTATCATACACTATGTCTTAGTGACACACTATCGCTA
GATGGTGNACTCTNACTGTCTACTTCATCTCGCATTCGTCACTCGTACTC
ATATCAGCGTCCANGNATATGTATGATACGTCTACACGAGTACATATTTA
TATTGTAGATCTCATANGTNTGACCCTCACTGATAGCTACGTACGAGCTC
TCGATATCTAATCATAGCTGCCNACTGACACTACATAGTAGCTNCTCGTG
ATCGCTACACGTTACCCTATACTCACTCAGTCTCAGANTCGCGTGCTTGC
CGCTGCTACCACATATACACCTCTCCTTCAGCACGAGCATGCTAGNACTC
TTATCTCGAGCTATACTGCCTCGCTATCGAGTACACTGATAGCGCTGACA
GTAGNCGCACATCGCGATCGCCGTGTATGATGCGTATTGTCACCTACAGC
TACGTGCTCGTCTGTGACGCTGCCGTCTCGCATGTGTNATCGTTTCGACA
TATATTATATACGATACATAGCTGCACATGCTCGCCGTTGATCNTNATGA
GAGTACTCGTGCCAACTTAACNTCGGCAGTCGCTCTCGTGCCGTCTCTGA
CGTCTGATCTACATATCACAGATCATCATAGCTGCTCTACATTATACTAG
CTCTCGCTATATATAGCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAATAACGCCCCTTATGTCTCATCTTTTTTC
CTTGAAAATTCTCCTTATAGAAGCACTAGTCCTTAGATGAAGGGCCTAAG
CTCATTTGAAACAATCTCATCTTTACTAAACAAATCTTTCAAGGAATCTA
TTTCATATAAAGACTGATCTTGCAGATAGAAACAAACTTCTAGTGAACAA
CACAAACCAGTATGATATGTCGTAGGGTTAATAAAACATGATTATAAGTT
TCTATCTTCTAAAAAAAAGTTTAACTTAATAATTTTTCAAAAGTAGGTTA
TGCTATTTTTATAATGCACGGGGCGGTGGGGGGGGGGGATAATTTGGGGA
AGTNNNNNNNNNNNNCCCCCCCCTTTTTTTTGTTCTTGTTTTTTCCCTCN
CTGGNCTTTGCGTCTCTTTGGCTGGCCNGCCCTTGGCTGGGGTTTGTTTC
TCTCGCTTTGTGCGTTCTCTTCTTTTCGGTGGCGCTTTTCGTCTTTCTTG
TCTCTGCTGTTGCTTGGCCCGCTTTCTTTGGTGTGCTTGTGGGTGTGTAT
TTCTCTTCGGTTGTTCTCCTTCTTGCGTTCTCTGCCTCTTGGTCCTCTTT
TCCGGCGGGCGTTTTTTTTTTTTTTCTTTGTCTGCTTCTGGTCGTCTTGG
TTGGTCTGTGTTGTCGTGGTGTGTTTTTCTTTGGCGCGTTCCCGCTCGTG
TGCCCTTGCTGGTTTGCTTTTTGCGTTGGGGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_m11.g1 MSMg01no507_m11.g1 CHROMAT_FILE:
MSMg01no507_m11.g1 PHD_FILE: MSMg01no507_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:26 2005
         (325 letters)



>mm_chr12_98949925_98950651
          Length = 727

 Score =  547 bits (283), Expect = e-160
 Identities = 312/327 (95%), Gaps = 12/327 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccttatgtctcatcttttttccttgaaaattctccttatagaagcactagtccttagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccttatgtctcatcttttttccttgaaaattctccttatagaagcactagtccttagat 260

                                                                       
Query: 61  gaagggcctaagctcatttgaaacaatctcatctttactaaacaaatctttcaaggaatc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagggcctaagctcatttgaaacaatctcatctttactaaacaaatctttcaaggaatc 320

                                                                       
Query: 121 tatttcatataaagactgatcttgcagatagaaacaaacttctagtgaacaacacaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcatataaagactgatcttgcagatagaaacaaacttctagtgaacaacacaaacc 380

                                                                       
Query: 181 agtatgatatgtcgtagggttaataaaacatgattataagtttctatcttctaaaaaaaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtatgatatgtcgtagagttaataaaacatgattataagtttctatcttctaaaaaaaa 440

                                                                       
Query: 241 -gtttaact-taataatttttcaaaagtaggttatgctatttttataatgcacggggcgg 298
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 441 agtttaacaataataatttttcaaaagtaggttatgctatttttataatgcacgggg--- 497

                                      
Query: 299 tgggggggggggataatttggggaagt 325
            ||||||      ||||||||||||||
Sbjct: 498 -gggggg------taatttggggaagt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 727
Length adjustment: 9
Effective length of query: 316
Effective length of database: 718
Effective search space:   226888
Effective search space used:   226888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)