Query= MSMg01no508_i09.b1 MSMg01no508_i09.b1 CHROMAT_FILE:
MSMg01no508_i09.b1 PHD_FILE: MSMg01no508_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:27 2005
(602 letters)
>mm_chr12_58948516_58949517
Length = 1002
Score = 1083 bits (560), Expect = 0.0
Identities = 590/600 (98%), Gaps = 2/600 (0%)
Strand = Plus / Minus
Query: 4 gaattcttctcttttacacttctattccatatcaagtcattgagcaaaacatcagccaaa 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaattcttctctttcacagttctattccatatcaagtcattgagcaaaacatcagccaaa 743
Query: 64 cagaaaggacaatagaatttcatattcttccctgtcaagttgtttctggattgacaacag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cagaaaggacaatagaatttcatattcttccctgtcaagttgtttctggattgacaacag 683
Query: 124 tccaaatctggcatctagcaagtagggacaatggctctaacggggtgtctcattctgtgc 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 682 tccaaatctggcatctagcaagtagggacaatggccctaacggggtgtctcattctgtgc 623
Query: 184 ccctgggattctgggaggagtatgtgagttttgatgcaacccagaaatacctgtatattg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccctgggattctgggaggagtatgtgagttttgatgcaacccagaaatacctgtatattg 563
Query: 244 ggtatcctagtcctctagtttgggagcctgctgcttttatactc-ttttgtactgaacaa 302
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct: 562 ggtatcctagtcctctagtttgggagcctgctgctttta-actctttttgtactgtacaa 504
Query: 303 gtgatacttctagtttcttcagtttcttcctttctccaagggaactgctctataaacata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgatacttctagtttcttcagtttcttcctttctccaagggaactgctctataaacata 444
Query: 363 ttcatgttgatgctgctgacattttgagattttattgttctacaatcgaggtcattataa 422
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 ttcatgttgatgctgcttacattttgagattttactgttctacaatcgaggtcattataa 384
Query: 423 tgtgcaccctgtgtgcagggcccaggttcatataggcatcaggttcaccctaaggcccct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgcaccctgtgtgcagggcccaggttcatataggcatcaggttcaccctaaggcccct 324
Query: 483 gtcttgaaacccatatttatacttatttaattttaatcattgtaattataatcagacact 542
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 323 gtcttgaaacccatatttatacttatttaattttaattattgtaattataatcagactct 264
Query: 543 aaacagtaaataaaaagtactatatcaagtcaaaatggagaagaaaaagaaagaagaaaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaacagtaaataaaaagtactatatcaagtcaaaatggagaagaaaaagaaagaagaaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_i09.g1 MSMg01no508_i09.g1 CHROMAT_FILE:
MSMg01no508_i09.g1 PHD_FILE: MSMg01no508_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:27 2005
(572 letters)
>mm_chr12_58865009_58865982
Length = 974
Score = 1071 bits (554), Expect = 0.0
Identities = 569/574 (99%), Gaps = 2/574 (0%)
Strand = Plus / Plus
Query: 1 aatgaactcatgatgatcattagaagcagaaataaaaccgccccccatcttctgtggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaactcatgatgatcattagaagcagaaataaaaccgccccccatcttctgtggttg 260
Query: 61 gaacatt-aaagttttaaagcaataagcagttttagcagttacttggagtagcattgaaa 119
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gaacattaaaagttttaaagcaataagcacttttagcagttacttggagtagcattgaaa 320
Query: 120 ccttttataaacatcttttcaccctgaagaacttcaccttctttcatgagcacaaaaaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttttataaacatcttttcaccctgaagaacttcaccttctttcatgagcacaaaaaca 380
Query: 180 gagaatcctagagttaggaatattgtacatagcccacagtgagcatttgttttatgttta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaatcctagagttaggaatattgtacatagcccacagtgagcatttgttttatgttta 440
Query: 240 ttgaaattagtatttttaaaaaattccttcaaaaagaaatacatttcaactgtggactca 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaaattagtattttaaaaaaattccttcaaaaagaaatacatttcaactgtggactca 500
Query: 300 cagtggtaagaaccagggtataagaagaggtatgtgagttttataactgtgatagtaagc 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtggtaagagccagggtataagaagaggtatgtgagttttataactgtgatagtaagc 560
Query: 360 agatatgcagtttagctttgtattagtttcctttaatgttcagaagaataaactaatctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatatgcagtttagctttgtattagtttcctttaatgttcagaagaataaactaatctc 620
Query: 420 actatgccaattatttgaatctaagtaaattaaaagtaagataaggttggtttttaggga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actatgccaattatttgaatctaagtaaattaaaagtaagataaggttggtttttaggga 680
Query: 480 tgaaatagttcaaaagactaaggctttttaaaaagtgcgtatcaggactaaggtttagaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaatagttcaaaagactaaggctttttaaaaagtgcgtatcaggactaaggtttagaa 740
Query: 540 ttgcatgtctggaaaa-ctattcataatctgctt 572
|||||||||||||||| |||||||||||||||||
Sbjct: 741 ttgcatgtctggaaaaactattcataatctgctt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 974
Length adjustment: 10
Effective length of query: 562
Effective length of database: 964
Effective search space: 541768
Effective search space used: 541768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
