Query= MSMg01no508_j14.b1 MSMg01no508_j14.b1 CHROMAT_FILE:
MSMg01no508_j14.b1 PHD_FILE: MSMg01no508_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:33 2005
(615 letters)
>mm_chr12_66181367_66182381
Length = 1015
Score = 1133 bits (586), Expect = 0.0
Identities = 608/616 (98%), Gaps = 5/616 (0%)
Strand = Plus / Plus
Query: 1 gcctcagatgcagagatctgcctgcatctgcctcccaattgctgagatcaaaggtgccta 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gcctcagatgcagagatctgcctgcatctgcctcccaattgctgaaatcaaaggtgccta 260
Query: 61 gctggccttaaactcttaacagtccttctccctcagtcttccaaatgctggcagtatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggccttaaactcttaacagtccttctccctcagtcttccaaatgctggcagtatagc 320
Query: 121 tatgagcaacccaccagctcactttccatgtttgatagtttggtagatgtacgcggatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgagcaacccaccagctcactttccatgtttgatagtttggtagatgtacgcggatgt 380
Query: 181 aatacaggttacttggcccaagatatcttcattgtctgaacgaatgctttgaatcctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacaggttacttggcccaagatatcttcattgtctgaacgaatgctttgaatcctggt 440
Query: 241 tctctctctctctctctctctctctctctcttttaatagatttatttgtttgttttatgt 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tctctctctctctctctctctctctctct--tttaatagatttatttgtttgttttatgt 498
Query: 301 atatgagtataccatcactctcttcagacacaccagaagagggcatcagatcccattaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atatgagtataccatcactctcttcagacacaccagaagagggcatcagatcccattaca 558
Query: 361 gatggttgt-aggccaccatgtggttgctgggaattgaactcaggaccactggaagagca 419
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatggttgtgag-ccaccatgtggttgctgggaattgaactcaggaccactggaagagca 617
Query: 420 gtaggtgctcttaactgctgagccatctctccggcccctgaatcctggttctcatacagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtaggtgctcttaactgctgagccatctctccggcccctgaatcctggttctcatacagc 677
Query: 480 aattctattttgacttgaaatactagggatgaaacttgggcctcagcctactggatagat 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 678 aattctattttgacttgaaatactagggatgaaactcgggcctcagcctactggatagat 737
Query: 540 agcctactactgagcttcagccccaccccctattacttttatttacattttttttgttat 599
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 738 agcctactactgagcttcagccccaccccctcttacttttatttacattttttt-gttat 796
Query: 600 tatttgcttacttaga 615
||||||||||||||||
Sbjct: 797 tatttgcttacttaga 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_j14.g1 MSMg01no508_j14.g1 CHROMAT_FILE:
MSMg01no508_j14.g1 PHD_FILE: MSMg01no508_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:33 2005
(528 letters)
>mm_chr12_66372451_66373384
Length = 934
Score = 839 bits (434), Expect = 0.0
Identities = 454/464 (97%), Gaps = 6/464 (1%)
Strand = Plus / Minus
Query: 1 tctctagcaaggtgtcacctccatcatcccacaccaagaaaaggggatgatgccaggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctctagcaaggtgtcacctccatcatcccacaccaagaaaaggggatgatgccaggcag 405
Query: 61 agagaggcattaattgttaacttttctataactgaggtctcagtgagagtgggaccgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agagaggcattaattgttaacttttctataactgaggtctcagtgagagtgggaccgaga 345
Query: 121 tttcgctcagaaaacaaaccaggtttctgtacaccctttgctttcaattacacaa----- 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tttcgctcagaaaacaaaccaggtttctgtacaccctttgctttcaattacacaatgtct 285
Query: 176 -ttcccagatagtgttgaataaatttaggctgtatttatcagttccatacccacagatct 234
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 284 cttcccagatagtgttgaataaatttaggctgtatttaccagttccatacccacagatct 225
Query: 235 gaaaattgtggatcaaacatattttaattacatttgtactgaagagctttttccttctca 294
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 224 gaaaattgtggatcaaacatattttaattacatttgtactgaaaagctttttccttctca 165
Query: 295 ttaatccctgaatgatgcagcataattgccatttgtgcagcttccacattgtgctcggag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ttaatccctgaatgatgcagcataattgccatttgtgcagcttccacattgtgctcggag 105
Query: 355 tgtagctactactatatacaagaggatacgaccctgtggatatcaaaatctctgattgcc 414
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 104 tgtagctactactatatacaagaggatccgaccctgtggatatcaaaatctctgattgcc 45
Query: 415 caaggttcttaccttggagagggataggactcagcagttgagag 458
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 44 caaggttcttaccttggagagggacaggactcagcagttgagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 934
Length adjustment: 10
Effective length of query: 518
Effective length of database: 924
Effective search space: 478632
Effective search space used: 478632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
