BAC Information

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BAC

Clone NameMSMg01-508K16
Chromosome12 (Build37)
Map Location 91,780,477 - 91,780,860
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn3, LOC100039498
Downstream geneLOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508K16.T7 (MSMg01no508_k16.b1)MSMg01-508K16.TJ (MSMg01no508_k16.g1)
ACCAG582526AG582527
length753756
length of high quality
(start - end)		601 (53 - 653)561 (82 - 642)
definitionCHROMAT_FILE: MSMg01no508_k16.b1 PHD_FILE: MSMg01no508_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:39 2005CHROMAT_FILE: MSMg01no508_k16.g1 PHD_FILE: MSMg01no508_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCAATTTTATTAGCAGAATAGTAGTACTTCATTGTGT
AAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGT
TCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA
GTATGTGTCCTTATTACATGTTGGAGCATCTTCTCAGTATATGCCCAGGA
GTGGTATTGCTGGGTCCTCAGTTAGTACTATGTCCAATTTTCTGAGAAAT
TGTCAAACTGATTTCCAGAGTGGTTGTACCAGCTTGCAATCCCACCAGCA
ATGGAGGAGTGTTTCTCTTTCTCCACATCTTTGCCAGCATCTGCTGTCAC
CTGAATTTTTGATCCTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGG
GTTGTTTTGATTTGCATTTCCCTGATGACTAAGGGTGTTAAACATTTCTT
TTGGTACTTCTCAGCCATTCGGTATTTCTTAGTTGAGAATTCTTTGTTTG
GCTTTGTATCCTATTTTTAATAGGGTTATTTGTTTCTCTGGAGTCTAACT
TCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATTGGATGGAGGA
TTGGTAGAGATCTTTGGCCAATCTGTTGGTTGCCTTTTTGTCCAATTAAG
AGATTCCTTTGCCTTACAGAAACTTTGCAATTTTATGAAGTCCCATTTGT
CAA

NTTTTGGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATATTTCCTCCTTAATT
GTTTTCTGGGTTTGATAATCTGAGAAATAGTTCCATAAAGTAGTTCAAAT
ATGTGCTAAACTTTGGCAAATTGATATTTAGTTCTGTATAATTTTGATTC
CTTAAGCATTGGACTAGGCATCAATGAGCAGAAAAAAAGCTTTGTATATA
CTGTAGCCATAGAAGACCAACTTTGGCTATTATAAATAAGGCTGCTATGA
ACATTGTGGAGCATGTGTCCTTCTTACTGGTTGGGACATCTTCTGGATAT
ATGCCCAGGAGAGGTATTGTGGGATCCTCCGGTAGTACTATGTCCAATTT
TCTGAGGAACCGCCAGACTGATTTCCAGAGTGGCTCTACAAGCTTGCAAT
CCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCAT
CTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTAGAGTGAAGTG
GAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTG
AACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCANGTGAGAAT
TCTTTGTTCAGCTCTGAGCCCCATTTTTTTAATGGGGTTATTTGATTTTC
TAGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_k16.g1 MSMg01no508_k16.g1 CHROMAT_FILE:
MSMg01no508_k16.g1 PHD_FILE: MSMg01no508_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:39 2005
         (561 letters)



>mm_chr12_91780477_91781436
          Length = 960

 Score =  698 bits (361), Expect = 0.0
 Identities = 379/385 (98%), Gaps = 1/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatatttcctccttaattgttttctgggtttgataatctgagaaatagttccataaagt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 agatatttcctccttaattgttttctgggtttgataatctgagatatagttccataaagt 325

                                                                       
Query: 61  agttcaaatatgtgctaaactttggcaaattgatatttagttctgtataattttgattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 agttcaaatatgtgctaaactttggcaaattgatatttagttctgtatagttttgattcc 265

                                                                       
Query: 121 ttaagcattggactaggcatcaatgagcagaaaaaaagctttgtatatactgtagccata 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 ttaagcattggactaggcatcaatgagcag-aaaaaagctttgtatatactgtagccata 206

                                                                       
Query: 181 gaagaccaactttggctattataaataaggctgctatgaacattgtggagcatgtgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaagaccaactttggctattataaataaggctgctatgaacattgtggagcatgtgtcct 146

                                                                       
Query: 241 tcttactggttgggacatcttctggatatatgcccaggagaggtattgtgggatcctccg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tcttaccggttgggacatcttctggatatatgcccaggagaggtattgtgggatcctccg 86

                                                                       
Query: 301 gtagtactatgtccaattttctgaggaaccgccagactgatttccagagtggctctacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 85  gtagtactatgtccaattttctgaggaaccgccagactgatttccagagtggttgtacaa 26

                                    
Query: 361 gcttgcaatcccaccaacaatggag 385
           |||||||||||||||||||||||||
Sbjct: 25  gcttgcaatcccaccaacaatggag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space:   523450
Effective search space used:   523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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