BAC Information

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BAC

Clone NameMSMg01-508N07
Chromosome12 (Build37)
Map Location 97,685,326 - 97,685,713
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508N07.T7 (MSMg01no508_n07.b1)MSMg01-508N07.TJ (MSMg01no508_n07.g1)
ACCAG582651AG582652
length7551,108
length of high quality
(start - end)
388 (330 - 717)---
definitionCHROMAT_FILE: MSMg01no508_n07.b1 PHD_FILE: MSMg01no508_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:52 2005CHROMAT_FILE: MSMg01no508_n07.g1 PHD_FILE: MSMg01no508_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTCAATAAXXXXXXXXXXXXXXXXXXXXXXXTTTTCAACAAGAGCGC
GGAATTCATCTGGGTTCTTAAAAATGGAGATGAGAAATGCTGGAAATCTG
AAAAGGACAGCTGAAGTATATGCTGCCCTAAGTATGCAGTATCTGTAGGG
CTGGGATATGTACTGTAAAAGCTGATCACTGTAATAATTTAACTTATTAG
AAAACGTTACCAGTGTTAAGTCTGTAAGTTCACACTTAGGAGTAGGGATG
TCCAATTTAGGTCCACAGAATCTCTGCAGTTTTAAATGAGACTAAGTGAA
CTGGGAAGAGTATGTCAAGTCTTCNATTTTTAAGTAAATATTATTTATTG
GTTTACTCTGTGTTGTGGAAAGGTACATATCAAGGTGCCCCAGTGGACAT
CAGAGTACAGCTTCAAGGACCTAATTCTCTCTTATACATAGGTCCTAGGA
ATTGAACACAAGTTTTCAGAATTGGTCACAAATGCCTTTAATCGTGGATC
CATCTCTCCTGGTCATGTATTGGCCTTTAAGAACAAAGACAAGTAAGGTT
CTATATCCCCACAGTAATAACGCTCAGTTAAAGTCACCCCAGTGTTCTCT
TGGGAGCCTCCTAACAATGGAGGGATAAAAACACCAACCCACCCACAAAC
CTTTCAACCCAAATTTGTCCTCTCTACAAGAAATTCATGGATAAAGATAG
AGCAGAGAATGAGAGAATATCCAAAATAACTATCCAACTTGAGACCCATC
CCATG
CCTCTTTTTCCTTCNCCCANGTCNAGGGGGCGATGGTGTGTTTTCCTCCC
AAACAAGACAGTGACAACCATAATAATTTATCCCCCAAAAGAAACAAAAG
AGAAGAAAAACGAGTATATAAAAGGCCTGCACTCAGATACGCCCACATCC
ATATTGAAGACCACCCCCTCCCGATCGAGCGCACTCACGGTATCCACTGC
AATCAACACCGACCCGTCACTCACATCTTTTTATCGCCCTCCGTATTCAC
CTAATTCCATTATCCATCTAAACACCCCCTAGCCGCCGCACCTCGCTAAA
TAATTAGTCGCGGCCACAAGAGGCCGGCATGGGCCCGATACGCGTTGAAA
GGCGAGAACAACGGTATATAGTATGGTAGAATAATGTGTTGAAGACACGG
ACTATAAAAGATTTCACCACAGAACCCCGAGTTATCGCGCCGTCGCGCCG
CGAGATGCGCCAACCGACAGAGCGCACCGGAAAGAAAAAAAGAAGAACAG
GACGCCGGATAGCTAGAGCGGCAACAGACGGAAATGACACAACTTAGAGA
TGGATAGAGATTAGTGTGAGCCAGCGAATTAAATCATAAGAGGAAGGAGA
ATTTGAAATATATAATCTACAGCGGATGACGCCGAGGCGACGGCACGCCG
CTGGTGACGAGTGCATGGTAAGATAATAGCGCCGCACAGTATTATCACTA
TGATCAGCGTCTGTGCCGACGTTGTAAAATGACCCGCCAGACGGGAAATA
TACCCGCGAGTAGAGAGTAAGGCGCACGGCGCAAGGACATCAGTAGGTCA
TACGACAATAGCGATTTAATAAGAGTTTGTCCCCGCGCCTCTCGTCCCCT
ATAATATTAGAACACCCATCTTCGCTTAGAGGCGTTCTACACCTCTCACA
CAGATTAGGATTAAATACCTAATTATATTATAATTTGCCTCTGCGTGGAG
CGCACCCAGTCTGCCCACGAAATAATAAATTCATAAGATAAGAATATGAA
AGCGACAAGGAACGAGATTGATATAGAATATATACACACCACCTAACGTA
CAAATTATAGAAAGACTTAGATATTGTAGAAACCAGGGATAGGCTATCAG
GCGTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_n07.b1 MSMg01no508_n07.b1 CHROMAT_FILE:
MSMg01no508_n07.b1 PHD_FILE: MSMg01no508_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:52 2005
         (388 letters)



>mm_chr12_97685298_97686085
          Length = 788

 Score =  681 bits (352), Expect = 0.0
 Identities = 379/388 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagtaaatattatttattggtttactctgtgttgtggaaaggtacatatcaaggtgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 416 ttaagtaaatattatttattggtttactctgtgttgtggaaaggtatatatcaaggtgcc 357

                                                                       
Query: 61  ccagtggacatcagagtacagcttcaaggacctaattctctcttatacataggtcctagg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 356 ccagtggacatcagagtacagcttcaaggagctaattctctcttatacataggtcctagg 297

                                                                       
Query: 121 aattgaacacaagttttcagaattggtcacaaatgcctttaatcgtggatccatctctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 296 aattgaacacaagttttcagaattggtcacaaatgcctttaatcgtgaatccatctctcc 237

                                                                       
Query: 181 tggtcatgtattggcctttaagaacaaagacaagtaaggttctatatccccacagtaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tggtcatgtattggcctttaagaacaaagacaagtaaggttctatatccccacagtaata 177

                                                                       
Query: 241 acgctcagttaaagtcaccccagtgttctcttgggagcctcctaacaatggagggataaa 300
           | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 176 aggcacagttaaagtcaccccagtattctcttgggagcctcctaacaatggagggataaa 117

                                                                       
Query: 301 aacaccaacccacccacaaacctttcaacccaaatttgtcctctctacaagaaattcatg 360
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 116 aacaccaacccacccacaaacctttaaacccaaatttgtcctttctacaagaaattcatg 57

                                       
Query: 361 gataaagatagagcagagaatgagagaa 388
           ||||| ||||||||||||||||||||||
Sbjct: 56  gataatgatagagcagagaatgagagaa 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)