BAC Information

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BAC

Clone NameMSMg01-508O05
Chromosome12 (Build37)
Map Location 97,775,346 - 97,775,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508O05.T7 (MSMg01no508_o05.b1)MSMg01-508O05.TJ (MSMg01no508_o05.g1)
ACCAG582695AG582696
length759766
length of high quality
(start - end)
244 (77 - 320)587 (78 - 664)
definitionCHROMAT_FILE: MSMg01no508_o05.b1 PHD_FILE: MSMg01no508_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:57 2005CHROMAT_FILE: MSMg01no508_o05.g1 PHD_FILE: MSMg01no508_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCTCCTTAGCAAACCAAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCATGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAG
CAGATGCTGGGGGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTTTGGAAATCAGTCTGGCAGTTCCTCA
GAAAATTGGATATAGTACTACTGTTTGATCCCACAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCAAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAACCTTATTTACAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTCACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAA
GGAACTCACACAATATGTACTCACTGATTAGTGGATAATAGCCAAGAAAC
TTAGGATACCCCAGATATAAGATACAATTTTGCTTAACGCATGAAACTTC
AGAAAGAATAAAGACCCAAAGTGCGGACACTTTTTCCCCTTCCTAAGAAT
TGGGTAACA
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAAATCAGATTTTCACACCATGTGTATCAA
ATACATATACTTACAATATGAAGATATCAAAAACAAAATTTGAAGAAATA
ATTCATGGAAAACAAGAAAATACAATTCATTTTCATTTTCACATACAATT
CATTGAATGTGTCTTTTCCAGCATCTAATTTCTTTTGTTTGAAAAAAACA
TTAATTTTTCTAAGATAACACTGTGTTAATTAATGAAGTTCTCAGTGTTA
GAGTTGAGAACTTCACTTAGACTAATATTTCTTAAAATTCTCTTAGTCTT
CAGTATTTTTAAATATAATTTTTATTACTATTATTAATTATTTATTGTTC
AGATCTATTTCTGGGCATGTTATCTCATCTTGTGTTTAGTATAAGCCTAA
TCACTAGTGATTTTGTTAGGATAATATCACCTTATTCCAAAAGGGCTCTG
AACTTAATGCAATATTAACAAAATACTTTGATAAACATGAGATATTGATG
AACAGATACCAAAGAGATGGTTTACCGTGTCTTAGTGTCCAGGAAGTTTT
AATTTCCGTGTCATGATTTTCTTGCCTATGCACCAGGAAGACACAGTCAC
AGAGCTTGAGAGAGAATAATGCATTTCACAACAGTGGGTTAAAATTTCCT
AACAGTGGTGGCGCATGCCTCTAATCCCAGCACTCGGAAGCAGAGGCAGG
CGGATTTCTGAGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_o05.g1 MSMg01no508_o05.g1 CHROMAT_FILE:
MSMg01no508_o05.g1 PHD_FILE: MSMg01no508_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:57 2005
         (587 letters)



>mm_chr12_97775346_97776331
          Length = 986

 Score =  832 bits (430), Expect = 0.0
 Identities = 464/476 (97%), Gaps = 4/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattttcacaccatgtgtatcaaatacatatacttacaatatgaagatatcaaaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gattttcacaccatgtgtatcaaatacatatacttacaatatgaagatatcaaaaacaaa 416

                                                                       
Query: 61  atttgaagaaataattcatggaaaacaagaaaatacaattcattttcattttcacataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atttgaagaaataattcatggaaaacaagaaaatacaattcattttcattttcacataca 356

                                                                       
Query: 121 attcattgaatgtgtcttttccagcatctaatttcttttgtttgaaaaaaacattaattt 180
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 355 attcattgaatgtgtcttttccagcatctaatttcttttgtttg-aaaaaccattaattt 297

                                                                       
Query: 181 ttctaagataacactgtgttaattaatgaagttctcagtgttagagttgagaacttcact 240
           ||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 296 ttcaaagataacactgtgttaattactgtagttctcagtgttagagttgagaacttcact 237

                                                                       
Query: 241 tagactaatatttcttaaaattctcttagtcttcagta-tttttaaatataatttttatt 299
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 236 tagactaaaatttcttaaaattctcttagtcttcagtattttttaaatataatttttatt 177

                                                                       
Query: 300 actattatta--attatttattgttcagatctatttctgggcatgttatctcatcttgtg 357
           ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 176 actattattaacattatttattgttcagacctatttctgggcatgttatctcatcttgtg 117

                                                                       
Query: 358 tttagtataagcctaatcactagtgattttgttaggataatatcaccttattccaaaagg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tttagtataagcctaatcactagtgattttgttaggataatatcaccttattccaaaagg 57

                                                                   
Query: 418 gctctgaacttaatgcaatattaacaaaatactttgataaacatgagatattgatg 473
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 56  gctctgaacttaatgcaatattaacaaaatactttgatgaacatgaaatattgatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space:   563152
Effective search space used:   563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)